Gene Information

Name : PST_0906 (PST_0906)
Accession : YP_001171445.1
Strain : Pseudomonas stutzeri A1501
Genome accession: NC_009434
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1011463 - 1012167 bp
Length : 705 bp
Strand : -
Note : Code: TK; COG: COG0745

DNA sequence : 
TTGAATGCACAGCAACGCCCAGCGGCCGAGAACGACAGGAACGACATGCGCATTCTGCTGGTGGAAGACGATCGCGCCCT
TGGCGAGGGCATCCGCACCGCGCTCAAGCCGGAGGGCTATACGGTGGACTGGCTGCAGGACGGCGCCAGTGCGCTGCATG
CGCTGAACCATGAAAGCTTCGAGCTGGTCATCCTCGACCTCGGCCTGCCGCGCCTGGACGGGCTGGAGCTGCTCAAGCGC
CTGCGCGCTGCCGGCAATCCGGTGCCGGTGCTGGTACTCACCGCGCGCGATGCCACCAGCGACCGCATCGCCGGGCTGGA
CGCCGGCGCCGACGACTACCTGGTCAAGCCGTTCGACGTCGCCGAACTCAAGGCCCGCCTGCGTGCCCTGCTCCGGCGCA
GCTTCAATCGACCGGAACCGGTGCTGGAATACCGCGGCATCCTGCTCGACCCGGTCAACCAGCAGGTCAGTTACCAGGGC
ACGCCGATCAACCTGCCGCGCAAGGAGTTCGTCCTGCTCCACGAGCTGCTCGCCCAGCCCGGTCGCGTGCTGACCCGCGA
TCGCCTGCAGCAGGTGCTCTACGGCTGGGACGAGGACGTCGAGAGCAATGCGCTGGAGGTGCACATCCACCACCTGCGCA
AGAAGTTCTTTCCCGAGCTGATCCGCACCGTGCGCGGCGTCGGCTATCTGGTGGACAAATGCTGA

Protein sequence : 
MNAQQRPAAENDRNDMRILLVEDDRALGEGIRTALKPEGYTVDWLQDGASALHALNHESFELVILDLGLPRLDGLELLKR
LRAAGNPVPVLVLTARDATSDRIAGLDAGADDYLVKPFDVAELKARLRALLRRSFNRPEPVLEYRGILLDPVNQQVSYQG
TPINLPRKEFVLLHELLAQPGRVLTRDRLQQVLYGWDEDVESNALEVHIHHLRKKFFPELIRTVRGVGYLVDKC

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 8e-27 47
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-22 43
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-21 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PST_0906 YP_001171445.1 DNA-binding response regulator BAC0487 Protein 1e-25 48
PST_0906 YP_001171445.1 DNA-binding response regulator BAC0197 Protein 8e-25 43
PST_0906 YP_001171445.1 DNA-binding response regulator BAC0638 Protein 9e-17 42
PST_0906 YP_001171445.1 DNA-binding response regulator BAC0083 Protein 9e-22 41
PST_0906 YP_001171445.1 DNA-binding response regulator BAC0308 Protein 3e-22 41
PST_0906 YP_001171445.1 DNA-binding response regulator BAC0288 Protein 4e-20 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PST_0906 YP_001171445.1 DNA-binding response regulator VFG1390 Protein 2e-28 48
PST_0906 YP_001171445.1 DNA-binding response regulator VFG0473 Protein 1e-26 47
PST_0906 YP_001171445.1 DNA-binding response regulator VFG0596 Protein 7e-23 43