Gene Information

Name : tctD (PST_4042)
Accession : YP_001174507.1
Strain : Pseudomonas stutzeri A1501
Genome accession: NC_009434
Putative virulence/resistance : Virulence
Product : transcriptional regulatory protein TctD
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 4391336 - 4392151 bp
Length : 816 bp
Strand : +
Note : Code: TK; COG: COG0745

DNA sequence : 
ATGCGCCGCGCAAGGTGGATCGAGCCACCTGTAAGCGATCCTATGGGGTCAAGCTTTCGCCAGCCTTTCAGCGTCGAAAG
CCTGCGGCGACTCTTGCCGTCTGCCGCTACACTGGCGCCCCGTCGCAATGGCAGAGGACAGGCAATGCGGATTCTTCTGG
TCGAGGATCACCCCCAGCTGGCCGAGAGCGTGGCGCAGGCGCTGCGCGGCGCCGGCTGGACCGTGGACCTGCTGCACGAC
GGCATCGCCGCCGACCTGGCGCTGGCCAGCGAGGACTATGCGCTGGCGATTCTCGACGTCGGGCTGCCGCGGCTGGATGG
CTTTCAGGTGCTGGCGCGCCTGCGCGGGCGCGGCAAGACGCTGCCGGTGCTGATGCTCACCGCGCGAGGTGAGGTCAGCG
ATCGCGTGCACGGGCTCAACCTCGGTGCCGACGACTACCTGGCCAAGCCGTTCGAGCTGTCCGAGCTGGAAGCGCGGGTC
AAGGCGCTGCTGCGACGCAGCGTCGGCGGCGGCGAGCGCCAGCAGCGCTGCGGTGTACTGGTCTACGACCTGGATGCGCG
GCGCTTCAGCCTGGCCGACGAGCCGCTGACGCTGACCTCCCGGGAACAGAGCGTGCTCGAGGCACTGATCGCCCGTCCCG
GCCGGGTGATGAGCAAGGATCAGCTGGCCGCCCAGGTGTTCGGCCTGGACGAGGACGCCAGCGCCGACGCCATCGAGATC
TATGTCTACCGGCTGCGCAAGAAGCTCGAGGGCCAACCGGTGCGCATCGTCACCTTCCGCGGCCTGGGCTACATGCTCGA
GGCGCTCGATGGCTGA

Protein sequence : 
MRRARWIEPPVSDPMGSSFRQPFSVESLRRLLPSAATLAPRRNGRGQAMRILLVEDHPQLAESVAQALRGAGWTVDLLHD
GIAADLALASEDYALAILDVGLPRLDGFQVLARLRGRGKTLPVLMLTARGEVSDRVHGLNLGADDYLAKPFELSELEARV
KALLRRSVGGGERQQRCGVLVYDLDARRFSLADEPLTLTSREQSVLEALIARPGRVMSKDQLAAQVFGLDEDASADAIEI
YVYRLRKKLEGQPVRIVTFRGLGYMLEALDG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-27 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 7e-27 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tctD YP_001174507.1 transcriptional regulatory protein TctD BAC0083 Protein 3e-34 46
tctD YP_001174507.1 transcriptional regulatory protein TctD BAC0638 Protein 6e-32 45
tctD YP_001174507.1 transcriptional regulatory protein TctD BAC0347 Protein 9e-30 42
tctD YP_001174507.1 transcriptional regulatory protein TctD BAC0111 Protein 2e-34 42
tctD YP_001174507.1 transcriptional regulatory protein TctD BAC0197 Protein 4e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tctD YP_001174507.1 transcriptional regulatory protein TctD VFG1390 Protein 2e-32 45
tctD YP_001174507.1 transcriptional regulatory protein TctD VFG0596 Protein 4e-28 42