Gene Information

Name : pilR (PST_3646)
Accession : YP_001174113.1
Strain : Pseudomonas stutzeri A1501
Genome accession: NC_009434
Putative virulence/resistance : Virulence
Product : two-component response regulator PilR
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 3935421 - 3936812 bp
Length : 1392 bp
Strand : +
Note : Code: T; COG: COG2204

DNA sequence : 
ATGCTCGCCAGCCGCCCGGAAGGCGACACCCGCTTCAGGAACCAGAGCAAGACCATGACCGCGCGCCAGAAAGCCCTGAT
CATCGACGACGAGCCGGACATCCGCGAGCTGCTGGAGATCACCCTCGGCCGCATGAAGCTCGATACCCGCAGCGCACGCA
ACCTAAAGGAGGCGCGCGAGCTGCTGGCACGCGAGCACTACGACCTGTGCCTGACCGATATGCGCCTGCCCGACGGCAGC
GGCCTTGAGCTGGTCCAGCACATCCAGCAACAGTACCCGCAACTGCCCGTGGCGATGATCACCGCCTATGGCAGCCTGGA
TACCGCCATCGGCGCACTCAAGGCCGGTGCGTTCGACTTCCTCACCAAACCGGTGGACCTGAACCGCCTGCGCGAGCTGG
TCAGCACCGCCCTGCGCCTGCGCGCACCCGCAGCCGAAGCGCCGGTGGACAGTCGCCTGCTGGGCAGCTCGCCGCCGATG
AAAACCTTGCGCAAGCAGATCGGCAAGCTCGCCCGCAGCCAGGCACCCGTCTACATCAGCGGCGAGTCGGGCAGCGGCAA
GGAACTGGTGGCACGCCTGATTCATGAGCAGGGCCCGCGCAGCGAAAAGCCATTCGTGCCGGTCAATTGCGGTGCCATTC
CGTCGGAGCTGATGGAAAGCGAGTTCTTCGGCCACAAGAAGGGCAGCTTCAGCGGCGCCATCGAGGACAAGCCCGGTCTG
TTCCAGGCCGCCAATGGTGGCACGCTGTTTCTCGACGAGGTGGCGGACCTGCCGCTGCCGATGCAGGTCAAGCTGCTGCG
CGCCATCCAGGAAAAGGCCGTGCGTGCCGTTGGCGGTGCGCAGGAAGTGATGGTCGATGTACGCATCCTCTGCGCCACCC
ACAAGGATCTCGCCAGCGAGGTCGCCGCAGGCCGTTTTCGCCAGGATCTCTACTACCGCCTGAACGTCATCGAACTGCGT
GTACCGCCACTGCGCGAACGCCGCGAAGACATCGGCCTGCTCGCCGATGTCATGCTGCGCCGTCTGGCGCAGGAATGCGG
CGAGGCCACGGCCCGCCTGCATCCCGATGCCCTGGCCAAGCTGGAGAACTATCGCTTTCCGGGCAACGTCCGCGAACTGG
AGAACATGCTCGAACGCGCCTACACCCTGTGCGAAGGCGATGAGATCAAGGCTGGCGACCTGCGCCTGGCGGATAGCCCA
GGCCTGCCGGAAAACGGCGAAGCCAGCCTGGCGCAGATCGACAACCTGGAGGACCACCTGGAGGAGATCGAGCGCAAGCT
GATCATGCAGGCCCTCGAAGAAACACGCTGGAACCGCACCGCGGCCGCCCAGCGACTGGGGCTGACCTTCCGCTCGATGC
GTTACCGTCTCAAGAAACTCGGACTGGACTGA

Protein sequence : 
MLASRPEGDTRFRNQSKTMTARQKALIIDDEPDIRELLEITLGRMKLDTRSARNLKEARELLAREHYDLCLTDMRLPDGS
GLELVQHIQQQYPQLPVAMITAYGSLDTAIGALKAGAFDFLTKPVDLNRLRELVSTALRLRAPAAEAPVDSRLLGSSPPM
KTLRKQIGKLARSQAPVYISGESGSGKELVARLIHEQGPRSEKPFVPVNCGAIPSELMESEFFGHKKGSFSGAIEDKPGL
FQAANGGTLFLDEVADLPLPMQVKLLRAIQEKAVRAVGGAQEVMVDVRILCATHKDLASEVAAGRFRQDLYYRLNVIELR
VPPLRERREDIGLLADVMLRRLAQECGEATARLHPDALAKLENYRFPGNVRELENMLERAYTLCEGDEIKAGDLRLADSP
GLPENGEASLAQIDNLEDHLEEIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGLD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 2e-98 50
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 2e-98 50

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pilR YP_001174113.1 two-component response regulator PilR BAC0467 Protein 9e-71 44
pilR YP_001174113.1 two-component response regulator PilR BAC0089 Protein 2e-71 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pilR YP_001174113.1 two-component response regulator PilR VFG1214 Protein 6e-169 85