Gene Information

Name : PST_3390 (PST_3390)
Accession : YP_001173860.1
Strain : Pseudomonas stutzeri A1501
Genome accession: NC_009434
Putative virulence/resistance : Virulence
Product : transcriptional activator CopR
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3665072 - 3665806 bp
Length : 735 bp
Strand : +
Note : Code: TK; COG: COG0745

DNA sequence : 
ATGGCGGCCTCGTTAACCTGCACACTGAGTCGAAACAAACTTTCGGAATCTGCCTGCATGAAATTACTGGTCGCTGAAGA
CGAACCCAAAACTGGTTCTTACCTGCAACAAGGACTTACCGAAGCTGGATTTACCGTCGACCGGGTCACGACTGGCACAG
ATGCGCTCCAATATGCGCTGAGTGAGGTTTATGACCTTTTAATCCTTGACGTGATGATGCCAGGGTTAGATGGATGGGAG
GTGCTACGCATGGTCAGATCAGCAGGGCACGAAATACCCGTACTGTTCTTGACCGCACGTGATGGCGTGGAAGACCGCGT
CAAAGGCCTGGAGCTGGGCGCGGACGACTACCTGATTAAGCCGTTCGCGTTCTCCGAACTTCTGGCAAGGGTCCGGACAT
TGCTTCGCAGGGGCAGCGGCTCCCCCACCCAAACCACCGTGAAAATTTCAGATCTCGAAGTGGACCTGCTAAAGCGCCGC
GCCGTTCGTGCTGGGAAGCGAATTGATCTGACGGCGAAGGAATTTTCACTGCTGGAATTGTTGATGCGCCGACGCGGCGA
GGTGCTTCCGAAGTCTCTGATTGCATCTCAGGTATGGGATATGAACTTCGACAGCGACACCAACGTTATCGAGGTCGCGG
TACGCCGTCTGCGCGCAAAAGTCGACGACGACTTCGAGCACAAACTGATCCATACCGTGCGTGGCATGGGCTATATGATG
GATGCACCGGAGTGA

Protein sequence : 
MAASLTCTLSRNKLSESACMKLLVAEDEPKTGSYLQQGLTEAGFTVDRVTTGTDALQYALSEVYDLLILDVMMPGLDGWE
VLRMVRSAGHEIPVLFLTARDGVEDRVKGLELGADDYLIKPFAFSELLARVRTLLRRGSGSPTQTTVKISDLEVDLLKRR
AVRAGKRIDLTAKEFSLLELLMRRRGEVLPKSLIASQVWDMNFDSDTNVIEVAVRRLRAKVDDDFEHKLIHTVRGMGYMM
DAPE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 7e-59 60
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-58 57

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PST_3390 YP_001173860.1 transcriptional activator CopR BAC0638 Protein 2e-82 84
PST_3390 YP_001173860.1 transcriptional activator CopR BAC0083 Protein 3e-87 81
PST_3390 YP_001173860.1 transcriptional activator CopR BAC0197 Protein 9e-69 64
PST_3390 YP_001173860.1 transcriptional activator CopR BAC0308 Protein 6e-69 63
PST_3390 YP_001173860.1 transcriptional activator CopR BAC0111 Protein 7e-73 62
PST_3390 YP_001173860.1 transcriptional activator CopR BAC0125 Protein 5e-68 61
PST_3390 YP_001173860.1 transcriptional activator CopR BAC0347 Protein 5e-67 60
PST_3390 YP_001173860.1 transcriptional activator CopR NC_002516.2.879194.p Protein 4e-32 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PST_3390 YP_001173860.1 transcriptional activator CopR VFG0596 Protein 3e-59 60
PST_3390 YP_001173860.1 transcriptional activator CopR VFG1390 Protein 6e-42 46
PST_3390 YP_001173860.1 transcriptional activator CopR VFG1386 Protein 1e-37 42
PST_3390 YP_001173860.1 transcriptional activator CopR VFG1389 Protein 5e-38 42