|
Name : topB (PST_2913) Accession : YP_001173401.1 Strain : Pseudomonas stutzeri A1501 Genome accession: NC_009434 Putative virulence/resistance : Unknown Product : DNA topoisomerase III Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0550 EC number : - Position : 3134600 - 3136447 bp Length : 1848 bp Strand : + Note : decatenates replicating daughter chromosomes DNA sequence : GTGACGGTGACCTGGTGCATCGGCCATCTGCTGGAGACCGCCCCGCCGGACGCCTATGACCCGCGCTACAAGCGCTGGGT GCTGGCCGACCTGCCGATCGTGCCGGAGCGCTGGAAGATGCTGGTCAAGCCGAAGACCGCCAGCCAGTTCAAGGCGGTCA AGCGTCTGCTCGGTGAATGCAGGGAACTGGTGATCGCCACCGACGCCGACCGCGAAGGCGAGATGATCGCCCGCGAGCTG GTTGAGCACTGCCGCTACCGCGGGCCCATCCGCCGGCTGTGGCTGTCGGCGCTGGACGATGCCTCGATCCGCAAGGCGCT GGCTGCGCTCAAGCCCGGCGCCGAGACCTTCAACCTCTACCACGCCGCCCTCGGCCGCTCGCGTGCTGACTGGCTGATCG GCATGAACATGAGCCGGCTGTTCACCCTGCTCGGCCGCCAGTCCGGCTACCGCGGCGTGCTGCCGGTGGGCCGCGTGCAG ACGCCGACGCTGCGTCTGGTGGTGGACCGCGACCGCAGCATCGCCGATTTCATCCCGGTGCCGTTCTGGGCCATCGACGT GCAGCTGCTCGCCGATGGCGCCGCGTTCACCGCGCAGTGGCAGGCGCCGGACGACCTTTGCGATGACCAGGGCCGCTGCC TCGATCAGGCTCGTGCGCAGCAGGCTGCGGACGCCATGCGCAACGCCGCCAGCGCTCGCCTGCTGAAGCTCAAGACCGAG CGGCAGCGCGAGGCGGCACCCTTGCCGTTCGATCTCGGCACGCTGCAGGAAGTCTGCTCGAAGAAGCTCGGCCTCGGCGC CCAGGAAACCCTCGACATCGCCCAGGCGCTGTACGAAACCCACAAACTGATCACCTATCCGCGCAGCGATTGCGGCTACC TGCCACTGAGCCAGCTCGGCGAAGCGCGGGCCATCGTCGCGGCGCTGACTCAAGCCGACCCGACGCTCGCGGCGCTGCAG CCGCATCTGGACCTGTCGCGCCGCTCGCGGGCGTGGAATGACGCCAAGGTCGGCGCCCACCACGGCATCGTCCCAACCGC CGCCGCGCGTGGTCTGGAACGCCTGGCCGGGCGCCCGCGTGCGGTGTATGAGCTGATCCGCGCGCGCTACCTGGCACAGT TCCTGCCCAACCACGAGTACGACCGCACCCAGGCTGACTTCGACTGCGCCGGCCAGGCGCTGCGCGCGGTGGGCAAGCGC GTCGTCGAACCGGGCTGGAAACGCGCCATGCCCGAAGCACTGGCGCCGGCACGGGGCAATCGCGAGGCACATGCGCCGCA AAGCCTGCCGGCGCTGCAGCAGGGCCAGGACTATGCCGTGGGCGAGATCACACTCAAGGACCAGCAGACACAACCGCCGA AGCCCTTCACCGAAGGCGACCTGATCAAGGCAATGAAGAACGTCGCCAAGCTCGTGGACGACCCGCGGCTGAAGCAGAAA CTCAAGGACACCACCGGCATCGGCACCGAGGCGACCCGCGCCGGGATAATTCAGGGCCTGCTCGACCGCGGCTATCTGGT TCGCCAGGGCAAGGCGCTGGCGGCGACACCGGCGGCGTTCAGCCTGATCGACGCCGTGCCGCGGCCGATCGCCGACCCGG GTACCACGGCGATCTGGGAGCAGGCGCTGGACATGGTGCAGAGCGGCGAAATGCCGTTGGAGGAATTCGTCGCCAAGCAA TCGGCGTGGATGAGCAAGCTGGTCGAACGCTGCGCCGGACTGCGCATGACCATCAGCGGCCCGCCGGTGGCCGCCGGCCG CAACGGCAAACCGTGGAAGAAGAAACGCAGCGCCACGCCACGCAGAGGGAGCGGCGCTCGGACGAGAAAACCGCGCGCGG CCGATTGA Protein sequence : MTVTWCIGHLLETAPPDAYDPRYKRWVLADLPIVPERWKMLVKPKTASQFKAVKRLLGECRELVIATDADREGEMIAREL VEHCRYRGPIRRLWLSALDDASIRKALAALKPGAETFNLYHAALGRSRADWLIGMNMSRLFTLLGRQSGYRGVLPVGRVQ TPTLRLVVDRDRSIADFIPVPFWAIDVQLLADGAAFTAQWQAPDDLCDDQGRCLDQARAQQAADAMRNAASARLLKLKTE RQREAAPLPFDLGTLQEVCSKKLGLGAQETLDIAQALYETHKLITYPRSDCGYLPLSQLGEARAIVAALTQADPTLAALQ PHLDLSRRSRAWNDAKVGAHHGIVPTAAARGLERLAGRPRAVYELIRARYLAQFLPNHEYDRTQADFDCAGQALRAVGKR VVEPGWKRAMPEALAPARGNREAHAPQSLPALQQGQDYAVGEITLKDQQTQPPKPFTEGDLIKAMKNVAKLVDDPRLKQK LKDTTGIGTEATRAGIIQGLLDRGYLVRQGKALAATPAAFSLIDAVPRPIADPGTTAIWEQALDMVQSGEMPLEEFVAKQ SAWMSKLVERCAGLRMTISGPPVAAGRNGKPWKKKRSATPRRGSGARTRKPRAAD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| topB | AAN62317.1 | putative DNA topoisomerase III | Not tested | PAGI-3(SG) | Protein | 2e-170 | 63 |
| topB | AAN62194.1 | putative DNA topoisomerase III | Not tested | PAGI-2(C) | Protein | 9e-177 | 61 |
| pph56 | CAI36097.1 | Topoisomerase IA | Not tested | PPHGI-1 | Protein | 4e-173 | 61 |
| topB | NP_807836.1 | DNA topoisomerase III | Not tested | SPI-7 | Protein | 6e-136 | 49 |
| topB | AAF14809.1 | topoisomerase B | Not tested | SPI-7 | Protein | 4e-136 | 49 |
| topB | NP_458624.1 | topoisomerase B | Not tested | SPI-7 | Protein | 6e-136 | 49 |
| topB1 | YP_005176228.1 | DNA topoisomerase III | Not tested | ICEPmu1 | Protein | 9e-135 | 48 |
| PMI2630 | YP_002152332.1 | DNA topoisomerase III | Not tested | Not named | Protein | 3e-134 | 47 |
| topB | AAW83109.1 | TopB | Not tested | GGI | Protein | 9e-101 | 41 |
