Gene Information

Name : PST_2712 (PST_2712)
Accession : YP_001173204.1
Strain : Pseudomonas stutzeri A1501
Genome accession: NC_009434
Putative virulence/resistance : Virulence
Product : transcriptional activator CopR
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2936273 - 2937004 bp
Length : 732 bp
Strand : -
Note : Code: TK; COG: COG0745

DNA sequence : 
GTGCGGCGCTGCCACACTTGCGCCGTCCACCACCGATGGAATATCCGCATGAAACTGCTGGTCGCCGAAGACGAGCCGAA
AACCGGCACCTACCTGCAGCAGGGGCTGAGCGAGGCCGGCTTCACCGTCGACCGCGTCACCAGCGGCACCGATGCGCTGC
AGCACGTGTTGAGCGTGCCCTACGACCTGCTGATCCTTGATGTGATGATGCCGGGTCTGGACGGCTGGGAAGTGCTGCGA
CTGGTGCGTGCCTCGGGCAACGAGGTGCCGGTGCTGTTCCTCACCGCGCGGGATCGTGTCGAGGACCGGGTCAAGGGGCT
GGAGCTGGGAGCGGATGACTACCTGGTCAAGCCGTTCGCCTTTTCCGAGCTGCTGGCGCGGGTACGCACCCTGCTGCGGC
GCGGCAATGCGACGGCGCTGCAGACCCAGCTGCAGGTGGCCGACCTGCAGGTCGACCTGCTCAAGCGTCGCGCCACGCGC
GCCGGTCAGCGCATCGACCTGACCGCCAAGGAGTTCGCCCTGCTGGAACTGCTGTTGCGCCGGCGCGGCGAGGTGCTGCC
CAAATCGCTGATCGCCTCGCAGGTGTGGGACATGAACTTCGACAGCGACACCAACGTCATCGAGGTGGCGATCCGCCGGC
TACGGGCGAAGATCGACGATGGCTTCGAGCCTAAACTGATCCATACCGCGCGCGGCATGGGCTACATGCTCGACGAGCCG
GACCCATCATGA

Protein sequence : 
MRRCHTCAVHHRWNIRMKLLVAEDEPKTGTYLQQGLSEAGFTVDRVTSGTDALQHVLSVPYDLLILDVMMPGLDGWEVLR
LVRASGNEVPVLFLTARDRVEDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGNATALQTQLQVADLQVDLLKRRATR
AGQRIDLTAKEFALLELLLRRRGEVLPKSLIASQVWDMNFDSDTNVIEVAIRRLRAKIDDGFEPKLIHTARGMGYMLDEP
DPS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 4e-49 54
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-48 53

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PST_2712 YP_001173204.1 transcriptional activator CopR BAC0638 Protein 2e-75 84
PST_2712 YP_001173204.1 transcriptional activator CopR BAC0083 Protein 1e-73 81
PST_2712 YP_001173204.1 transcriptional activator CopR BAC0111 Protein 2e-63 64
PST_2712 YP_001173204.1 transcriptional activator CopR BAC0197 Protein 3e-58 62
PST_2712 YP_001173204.1 transcriptional activator CopR BAC0308 Protein 3e-58 62
PST_2712 YP_001173204.1 transcriptional activator CopR BAC0125 Protein 1e-54 59
PST_2712 YP_001173204.1 transcriptional activator CopR BAC0347 Protein 9e-57 58
PST_2712 YP_001173204.1 transcriptional activator CopR NC_002516.2.879194.p Protein 8e-25 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PST_2712 YP_001173204.1 transcriptional activator CopR VFG0596 Protein 2e-49 54
PST_2712 YP_001173204.1 transcriptional activator CopR VFG1390 Protein 3e-36 46
PST_2712 YP_001173204.1 transcriptional activator CopR VFG1389 Protein 9e-32 46
PST_2712 YP_001173204.1 transcriptional activator CopR VFG1386 Protein 2e-34 42