Gene Information

Name : PST_0259 (PST_0259)
Accession : YP_001170808.1
Strain : Pseudomonas stutzeri A1501
Genome accession: NC_009434
Putative virulence/resistance : Unknown
Product : phage integrase family site specific recombinase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 296265 - 297440 bp
Length : 1176 bp
Strand : -
Note : Code: L; COG: COG0582

DNA sequence :
ATGCCTCTAACGGCCTTGCAGGTGAAGAGCGCTGCGCCACGCGAAAGTGACTATGGCCTTGCCGATGGCGGCGGTTTATT
CCTCTGGATTCGCGCAGCAGGCGGCAAGTCTTGGCGCTTCCGATTCCGCCTGGATGGCAAGCAGTCTCATATTTCCCTTG
GCACCATCGACAAGGTAACGCTCGTACAGGCTCGACAGCTGGCATCGGATGCACGCCAGCTTGTGGCGCAGGGTCGGCAC
CCCGGACTTGAGCGCAAGGCAATGCGAGCACAGGCGGCAATGTCTCGCGCCAATACCTTCAAGAGCCTTGCGTTGGAGTG
GCATCAGCATAAGGCTCCACGCTGGTCAGTCGGGTACGCTGGCGACGTAATGGAAGCCTTCGAGCTGGATGTTTTCCCTC
AAGTGGGAAACCTGCCGCTGACAGACATCAAGCCAATGCAGTGGTTGCAGGTCTTCCGCCGCATTGAGTCGCGAGGCGCT
CTAGAGAAGCTGCGCAAGGTTCGTCAGCGCTGCCAGGAGGTGTACCGATTCGCGATTGCTACTGGTCGCGCCGAGTACAA
CCCAATTGCAGACATTGGCGGGGCACTGCAGACGCCTACCTCACGGCATTACCCCTTCTTACCCATTGCCGAACTCCCAG
CACTGATACGCAGCATTCAGGCTTGCCCCGGACATGACGTCGTGAAGATCGCCACTCGCCTACTGATCCTGACCGGAGTA
CGTACAGCTGAATTGCGTGGAGCTCCCTGGTCGGAGTTTGACCTCGACCAAGCGCTCTGGCTGATTCCGGCCGCGCGCAT
GAAGATGCGCCGCGCCCACCTAGTTCCACTCTCCAATCATGCAGTGGCTGCACTGCGCGAGCTGGAACGCATCACTGGTG
GCTACACGCTCGCATTCCCCGGCCGTAACGATCCGGCAAAGCCCATGAGCGAGGCCGCCATCAACCAACTGCTGAAGCGG
TCCGGTTACGACGGACGTGCCACTGGGCATGGGTTTCGCCACACGATGTCAACCACCCTGCACGAACAGGGGTACCCCAG
CGAGTGGGTCGAAACCCAGTTAGCACATGTGGACAAGAACAGTATTCGCGGCACCTATAACCATGCTCAATATCTGGAGG
GGCGACGAGAGATGCTGCAATGGTATGCCAACCACCTGGATGAGCTGCATGACTAG

Protein sequence :
MPLTALQVKSAAPRESDYGLADGGGLFLWIRAAGGKSWRFRFRLDGKQSHISLGTIDKVTLVQARQLASDARQLVAQGRH
PGLERKAMRAQAAMSRANTFKSLALEWHQHKAPRWSVGYAGDVMEAFELDVFPQVGNLPLTDIKPMQWLQVFRRIESRGA
LEKLRKVRQRCQEVYRFAIATGRAEYNPIADIGGALQTPTSRHYPFLPIAELPALIRSIQACPGHDVVKIATRLLILTGV
RTAELRGAPWSEFDLDQALWLIPAARMKMRRAHLVPLSNHAVAALRELERITGGYTLAFPGRNDPAKPMSEAAINQLLKR
SGYDGRATGHGFRHTMSTTLHEQGYPSEWVETQLAHVDKNSIRGTYNHAQYLEGRREMLQWYANHLDELHD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 7e-110 54
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 7e-109 54
ECs4534 NP_312561.1 integrase Not tested LEE Protein 3e-108 53
int AAC31482.1 CP4-like integrase Not tested LEE Protein 2e-108 53
int ACU09430.1 integrase Not tested LEE Protein 2e-108 53
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 3e-108 53
int AAD44730.1 Int Not tested SHI-2 Protein 2e-107 53
int CAC39282.1 integrase Not tested LPA Protein 8e-109 53
aec33 AAW51716.1 Int Not tested AGI-3 Protein 7e-109 53
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 6e-107 53
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 8e-107 53
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 8e-107 53

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PST_0259 YP_001170808.1 phage integrase family site specific recombinase VFG0783 Protein 1e-108 53
PST_0259 YP_001170808.1 phage integrase family site specific recombinase VFG0598 Protein 3e-107 53