Gene Information

Name : PST_1001 (PST_1001)
Accession : YP_001171540.1
Strain : Pseudomonas stutzeri A1501
Genome accession: NC_009434
Putative virulence/resistance : Virulence
Product : putative outer membrane receptor
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG4771
EC number : -
Position : 1111666 - 1113888 bp
Length : 2223 bp
Strand : -
Note : Code: P; COG: COG4771

DNA sequence :
ATGTCTATCCCCTTCGCACGTACTGCCCTGTCCTGCGCCATGATCGGCTGCAGCTGGACGGCCCTGGCCCAGAACGCGCC
TGTCACGCTCAACGACACGGTCGTCAGCGCCTCCGGCTTCGAACAGAAGATCACCGAAGCACCGGCGAGCATCAGCGTCA
TCAGCCGTGAAGATCTGCAGCAAAAGCGCTACAACAACCTGGCGCAGGCTCTGGGCGACGTGGAAGGCATCGACATCGGC
CAGGGCACGGGCAAGACCGGCGGATTGAATATCAGCATCCGCGGCATGCCGAGCCAGTACACCCTGATCCTTATCGACGG
GCGCCGTCAGAACGCGGCGGGCAATGTCACGCCCAACGGCTTCAACGAAACGTCCACCAGCTTCATGCCGCCACTGTCTG
CCATCGAACGCATCGAAGTCATCCGCGGCCCGATGTCGACGCTCTATGGTTCTGACGCCATGGGCGGCGTGATCAACATC
ATTACCCGCAAGGTGGCCAAGGAATGGACCGGATCGCTGACGCAGGACTACACCTACCAGGAAGATCGCGACTTCGGGGA
TACCCGCAACACCAGCATCTACGCCAGTGGCCCGCTGGTCGATGGCTTGCTGGGCCTGCAGCTGCGCGGAAGCCTGTTCG
ATCGCGAAGCGTCCGACCTGAGCTACGGCAACGGCATCGAAGTGAGCAAGCGCGGCCCCTCTCCGGTCGAGGGCCGCACG
CATAACCTGGGCGCCCGCCTGAGCTTGACCCCGCATGAGGATCACGATTTCGGCCTAGACGTGGAACGTGGTCGCCAGGT
CTACAACAACGACGAATGTCAGCTCGGCAGCCTTGATGGCCAGAATCAGGAATGCACCGCCAGTGCGGCCACCCGGGCAA
ATGGTTACGCCGACGAGCTTCGTTTCGAACGTGAGCAGATCGCGCTCACCCATACCGGCCGTCTGGGTTTCGGCACGCTG
GAATCCAGCCTAATGCACAACACGACCGAAACCATTGGCCGCACCATTCCGGGCACAATCGGCACCCCGACCGCAGTCCC
GGGTGCCATCGGCGGTGCGCCACGCGAACTGGAGACGACCAATCTGGTACTGGACACCAAACTGGTCGCGCCGGTGGGCG
AATCGCACATCGCCACGGTTGGCGGCCAGTGGTGGAAAGCCGAGATGGACGACGGCATCGCTCAGACCACGTTCGAGCAG
AAAACCTGGGCCGTCTTCGCCGAAGACGAGTGGCGCCTGCGCGAAGATCTGGCGTTGACACTGGGTGCCCGCTACGACGA
TCACGAAGCCTTCGGCGGTCATGTCAGCCCACGCGCCTACCTGGTCTGGAATACCTCCGAGAATTGGACCATGAAGGGTG
GTGTGAGCCGCGGCTACCGCACGCCGGACCTGAACGATCTCCACTCCGGCGTGAATGGCGCCACACGTCAGGGCCAGGTC
ATCACCATCGGCAACCCTGATCTCGAGCCGGAAACCACGACGAGCACCGAATTCGGCGTGTATTTCGACAGCCTGGCTGG
CTTCAATGCCAACGCCACGCTGTTCCACAACAAGTTCAAGGACAAGATCGCCAGCGGCGACCCCATCCAGATCACCGGAC
GCCCGGGAATTCCCGACGGCAGTTATGCGCAGCAGATCAACATCGACGAGGCCGTCACCCAGGGCCTGGAACTCGCCGCA
AGCTGGGCATTCGCCCCAGCCTGGACGCTGAGCGCCAATTACACCTACACCGACAGCGAGCAGAAGAGCGGTGACAACAA
GGGCGAACCCCTGACCAACACGCCGGAGCACCTCGCCAATGCGAAGCTGAACTGGCAGACCACCGACCGCCTGAATCTCT
GGTTGAAGAGCGAGTACCGCGGCGAGCGTGCCCGCTTCACGTCCTCGTACGAGAACCTTGCCGATAACGGCCGTTACTCC
ACCAATCAGTCCATCTACGACACACTGGGCAAGAACACCAAGGCGTACACGCTGTTCCATCTGGGCGGCTCGTACCGCGC
CTCGGAAAACCTGACGTTCAACGCCGCCATCTACAACCTGCTGGACAAGGACTTCGTCGATGGCAAGGCTTACGGCACTT
ACAGCTATGCCAACTCTAATCCTGCGACTCTCCCAACCATAGGCACCGCCTATGGCACCGACTTCTCCCACTCCACCGCC
GGGACTACCGGGGTGATGGAAGAAGGCCGCCGTCTGTGGCTATCCGCCAACTTCACCTTCTGA

Protein sequence :
MSIPFARTALSCAMIGCSWTALAQNAPVTLNDTVVSASGFEQKITEAPASISVISREDLQQKRYNNLAQALGDVEGIDIG
QGTGKTGGLNISIRGMPSQYTLILIDGRRQNAAGNVTPNGFNETSTSFMPPLSAIERIEVIRGPMSTLYGSDAMGGVINI
ITRKVAKEWTGSLTQDYTYQEDRDFGDTRNTSIYASGPLVDGLLGLQLRGSLFDREASDLSYGNGIEVSKRGPSPVEGRT
HNLGARLSLTPHEDHDFGLDVERGRQVYNNDECQLGSLDGQNQECTASAATRANGYADELRFEREQIALTHTGRLGFGTL
ESSLMHNTTETIGRTIPGTIGTPTAVPGAIGGAPRELETTNLVLDTKLVAPVGESHIATVGGQWWKAEMDDGIAQTTFEQ
KTWAVFAEDEWRLREDLALTLGARYDDHEAFGGHVSPRAYLVWNTSENWTMKGGVSRGYRTPDLNDLHSGVNGATRQGQV
ITIGNPDLEPETTTSTEFGVYFDSLAGFNANATLFHNKFKDKIASGDPIQITGRPGIPDGSYAQQINIDEAVTQGLELAA
SWAFAPAWTLSANYTYTDSEQKSGDNKGEPLTNTPEHLANAKLNWQTTDRLNLWLKSEYRGERARFTSSYENLADNGRYS
TNQSIYDTLGKNTKAYTLFHLGGSYRASENLTFNAAIYNLLDKDFVDGKAYGTYSYANSNPATLPTIGTAYGTDFSHSTA
GTTGVMEEGRRLWLSANFTF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
r4 AAC61730.1 exogenous ferric siderophore receptor R4 Not tested PAI I CFT073 Protein 5e-128 46
unnamed CAC39288.1 hypothetical protein Not tested LPA Protein 2e-130 45
c3610 NP_755485.1 bifunctional enterobactin receptor/adhesin protein Not tested PAI I CFT073 Protein 3e-129 45
ECUMN_3356 YP_002414032.1 bifunctional enterobactin receptor/adhesin protein Virulence Not named Protein 3e-129 45
Z1178 NP_286713.1 bifunctional enterobactin receptor/adhesin protein Virulence TAI Protein 2e-129 45
Z1617 NP_287121.1 bifunctional enterobactin receptor/adhesin protein Not tested TAI Protein 2e-129 45
iha AAF36432.2 adhesin Virulence TAI Protein 2e-129 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PST_1001 YP_001171540.1 putative outer membrane receptor VFG1731 Protein 1e-129 45