Gene Information

Name : Rsph17025_4397 (Rsph17025_4397)
Accession : YP_001170545.1
Strain :
Genome accession: NC_009433
Putative virulence/resistance : Unknown
Product : transposase IS66
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3436
EC number : -
Position : 5360 - 6973 bp
Length : 1614 bp
Strand : -
Note : PFAM: transposase IS66

DNA sequence :
ATGGTAGAAGCGGCCATGTCCGATCCCGCTTGCGAACTCGAGAAACTGCGCGCCGAACTGGCGGCCACGAAGGCCGAACT
GGCGCAGGCGCGCGCGGTGGTCTCGACCTCGGAGGCGATGATCGCGGGGCTCAAGCTCGAGATCGCGCTGCTCCGGCGCG
AGCACTACGGGCGCAGCGCCGAACGCACCGCCAGGCTGATCGACCAGCTGGAACTGCAGCTCGAGGAGCTGGTGACCGCC
GCCGCCGAGGACAGGATCCGTGTGGAGAAGACGACGAAGGTCGCGGCCTTCGAGCGCCGGAAGCCGGTTCGCAAACCCTT
CCCCGAGCATCTGCCGCGCGAGCGCGTGGTGGTTCCGGCGCCGACGTCTTGTTCCTGCTGCGGATCGGACCGCATCGCGA
AGATGGGGGAAGACGTCACCGAGACGCTCGAGGTGGTGCCGCGGCAGTGGAAGGTGATCCAGACGGTTCGGGAGAAGTTC
ACTTGCCGGGCCTGCGAGAAGATCAGCCAGGCGCCGGCGCCCTTCCACCCGATCCCGCGCGGCTGGGCCGGCCCGAGCCT
GCTGGCCATGATCGTCTTCGAGAAGTTCGGCCAGCATCAGCCGTTGAACCGCCAGGCCGAGCGGTATGCCCGCGAGGGCG
TGGACCTGAGCCTTTCGACGCTCGCCGACCAGATCGGCGCCGTGGCGGAACTGCTGAAGCCGCTCCATGACCTGATCGAG
GCGCACGTCCTTGCCGCTTCCCGCCTGCATGGCGACGACACCACGGTGCCGCTGCTCGCCCGGGGCGGCACGAAGACGGC
GCGGCTCTGGACCTATGTTCGCGACGACCGCCCCTTCAGCGGCACCGCCCCGCCGGCGGTGGTCTTCCGCTTCTCCCGTG
ACCGGGCCGGGGAGCATCCGGCCGAGCACCTGACGGGGTGGAAGGGCATCCTGCAGGCCGACGCTTACGCCGGCTACAAC
CAGCTCTACCGCGGCGACCGGAAGCCGGGGCCGGTCCTGCCGGCGCTTTGTTGGAGCCATGCCCGGCGCAAGTTCTTCGA
GCTGGCCGATGTCGAGGGGAACATCCGCAAGGGCAAAGATGCGAAGGAAATCTCCCCGATCGCCTTCGAGGCGGTCAGGC
GCATCGACGCGATCTTCGAGATCGAGCGCAAGCTGAACGGGCAGGATCCCGCCGCCCGTCTCGCAGCACGACAGGAACGC
TCGGCCCCGCTGGTCGAGGATCTGGAGCGCTGGCTCCGGACCGAACGCGCGCTCCTGTCGAAGCACGCCAAAGTGGCCAA
GGCGATCGACTACCTGCTCTCGCCCGATCACTGGCCGGGCTTCACCCGGTTCCTGTCCGACGGCCGGGTCTGCCTGTCGA
ACAATTGCGCCGAGCGGGCGCTGCGGGGAGTGGCCCTCGGCCGCAAGAGCTGGCTCTTCGCCGGTTCCGAGCGCGGCGGA
CAGCGCGCCGCCTTCATGTATTCCCTCATCTGCACCGCCAAGCTCAACGGCATCGACCCGCAGGCATGGCTCGCGGACGC
CATTGCCCGGATCTCCGACCTGCCGGTCTCACGCCTGCCCGAACTGCTGCCGTGGCACTGGTGCAACCCAGCCCATCCCA
GGATCGCCGCATGA

Protein sequence :
MVEAAMSDPACELEKLRAELAATKAELAQARAVVSTSEAMIAGLKLEIALLRREHYGRSAERTARLIDQLELQLEELVTA
AAEDRIRVEKTTKVAAFERRKPVRKPFPEHLPRERVVVPAPTSCSCCGSDRIAKMGEDVTETLEVVPRQWKVIQTVREKF
TCRACEKISQAPAPFHPIPRGWAGPSLLAMIVFEKFGQHQPLNRQAERYAREGVDLSLSTLADQIGAVAELLKPLHDLIE
AHVLAASRLHGDDTTVPLLARGGTKTARLWTYVRDDRPFSGTAPPAVVFRFSRDRAGEHPAEHLTGWKGILQADAYAGYN
QLYRGDRKPGPVLPALCWSHARRKFFELADVEGNIRKGKDAKEISPIAFEAVRRIDAIFEIERKLNGQDPAARLAARQER
SAPLVEDLERWLRTERALLSKHAKVAKAIDYLLSPDHWPGFTRFLSDGRVCLSNNCAERALRGVALGRKSWLFAGSERGG
QRAAFMYSLICTAKLNGIDPQAWLADAIARISDLPVSRLPELLPWHWCNPAHPRIAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
c3563 NP_755438.1 hypothetical protein Not tested PAI I CFT073 Protein 3e-76 48
st57 CAC81895.1 ST57 protein Not tested LEE II Protein 1e-85 46
s0025 CAD33772.1 IS66-like transposase Not tested PAI I 536 Protein 8e-67 45
BCAM0248 YP_002232880.1 putative transposase Not tested BcenGI11 Protein 2e-87 44
ECs4547 NP_312574.1 hypothetical protein Not tested LEE Protein 2e-87 43
unnamed CAC39285.1 hypothetical protein Not tested LPA Protein 3e-88 43
Z4337 NP_289562.1 hypothetical protein Not tested OI-122 Protein 4e-88 43
unnamed AAC31494.1 L0015 Not tested LEE Protein 3e-88 43
Z5098 NP_290249.1 prophage-associated protein Not tested LEE Protein 4e-88 43
tnp AEA34686.1 transposase Not tested Not named Protein 1e-88 43
unnamed ACU09439.1 IS66 family element transposase Not tested LEE Protein 2e-87 43
unnamed CAI43806.1 hypothetical protein Not tested LEE Protein 6e-88 43
unnamed AAL57570.1 unknown Not tested LEE Protein 1e-88 43
Z1131 NP_286666.1 hypothetical protein Not tested TAI Protein 2e-87 42
Z1570 NP_287074.1 hypothetical protein Not tested TAI Protein 2e-87 42
aec53 AAW51736.1 Aec53 Not tested AGI-3 Protein 4e-82 42
Z4340 NP_289564.1 hypothetical protein Not tested OI-122 Protein 1e-76 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rsph17025_4397 YP_001170545.1 transposase IS66 VFG1700 Protein 1e-76 48
Rsph17025_4397 YP_001170545.1 transposase IS66 VFG1513 Protein 5e-67 45
Rsph17025_4397 YP_001170545.1 transposase IS66 VFG0793 Protein 2e-88 43