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Name : Rsph17025_4393 (Rsph17025_4393) Accession : YP_001170541.1 Strain : Genome accession: NC_009433 Putative virulence/resistance : Unknown Product : integrase catalytic subunit Function : - COG functional category : L : Replication, recombination and repair COG ID : COG2801 EC number : - Position : 2578 - 3411 bp Length : 834 bp Strand : + Note : PFAM: Integrase, catalytic region DNA sequence : GTGAAGGCCGTGGCGGAAACCCTGGGCGTGGCCCGGTCCAACCTGATCGAGCGGCTGCAAGGCAAGACAAAGCCGCGTCG GCGCTATCAGAAGGTGCAAGACGCGGCGGTGGTGCCAAGGATCACGGCGCTCGTGTCGGCGCGCCCGACCTATGGCTACC GGCGGATCACCGCGATCCTGAACCGCCAGTTGCGCTCGGAAGGCTTGGCACCGGTCAATCACAAGCGGGTCTACCGGATC ATGCAGGCCCATAACCTGCTGCTGGCCCGGAAATATTCCGAACGCCCCGAGCATGTTCACGACGGCAAGGTGATCGTCAT GCGCTCCAACCTGCGCTGGTGCTCGGACGGGTTCGAGTTCACCTGCTGGAACGGCGACATCGTCCGCGGCGCTTTCATCA TCGATGCCCATGATCGGGAAATCATCGCATGGCGCGCCGTGGTGAACGCCGGGATCAGCGGCTCCGACATCCGAGACATC ATGCTCGAAGCCGTCGAACGCCGCTTCGGCGCATACCGCGCCCCATCGGTTATCGAGATGCTCTCCGACAACGGGCCGCC CTACATCGCGAAGGACACCCAGATCTTCGCCCGCCAACTCGGTCTGAAGCCCTGCTTCACCCCGGTCCAGAGCCCGCAGA GCAACGGCATCTCGGAGGCTTTCGTGAAGACGCTGAAGCGCGACTACGTCCAGGTGACGCCATTGCCCCACGCACAGACC GCTCTCGGATTGATCGGAGCCTGGATCGAGGATTACAACGAAAACCACCCGCACTCAGGGCTGAAAATGCGCTCGCCCCG CGAGTTCATCGCAGCCCAAACCGCAACCGCCTGA Protein sequence : MKAVAETLGVARSNLIERLQGKTKPRRRYQKVQDAAVVPRITALVSARPTYGYRRITAILNRQLRSEGLAPVNHKRVYRI MQAHNLLLARKYSERPEHVHDGKVIVMRSNLRWCSDGFEFTCWNGDIVRGAFIIDAHDREIIAWRAVVNAGISGSDIRDI MLEAVERRFGAYRAPSVIEMLSDNGPPYIAKDTQIFARQLGLKPCFTPVQSPQSNGISEAFVKTLKRDYVQVTPLPHAQT ALGLIGAWIEDYNENHPHSGLKMRSPREFIAAQTATA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AAL67379.1 | transposase-like protein | Not tested | PAI II CFT073 | Protein | 9e-52 | 49 |
| unnamed | CAC39284.1 | hypothetical protein | Not tested | LPA | Protein | 2e-52 | 49 |
| unnamed | CAC39283.1 | hypothetical protein | Not tested | LPA | Protein | 2e-58 | 49 |
| insD | YP_002414033.1 | insertion element IS2 transposase InsD | Not tested | Not named | Protein | 1e-51 | 49 |
| SF2985 | NP_708759.1 | insertion element IS2 transposase InsD | Not tested | SHI-1 | Protein | 1e-50 | 48 |
| tnpF | AAD44739.1 | TnpF | Not tested | SHI-2 | Protein | 2e-51 | 48 |
| ECO111_3773 | YP_003236109.1 | putative IS2 transposase InsAB | Not tested | LEE | Protein | 6e-51 | 48 |
| S4050 | NP_839218.2 | insertion element IS2 transposase InsD | Not tested | SHI-2 | Protein | 3e-51 | 48 |
| SF3708 | NP_709447.1 | IS2 transposase TnpB | Not tested | SHI-2 | Protein | 3e-51 | 48 |
| SF3721 | NP_709460.1 | IS2 transposase TnpB | Not tested | SHI-2 | Protein | 3e-51 | 48 |
| S4061 | NP_839230.2 | insertion element IS2 transposase InsD | Not tested | SHI-2 | Protein | 2e-51 | 47 |
| S3189 | NP_838472.2 | insertion element IS2 transposase InsD | Not tested | SHI-1 | Protein | 2e-50 | 46 |
| aec49 | AAW51732.1 | Aec49 | Not tested | AGI-3 | Protein | 9e-51 | 46 |
| c5197 | NP_757045.1 | transposase insD | Not tested | PAI II CFT073 | Protein | 3e-41 | 44 |
| insD | YP_854263.1 | IS2 transposase | Not tested | PAI I APEC-O1 | Protein | 4e-43 | 44 |
| insD | AAZ04432.1 | IS2 transposase | Not tested | PAI I APEC-O1 | Protein | 3e-43 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Rsph17025_4393 | YP_001170541.1 | integrase catalytic subunit | VFG1732 | Protein | 5e-52 | 49 |
| Rsph17025_4393 | YP_001170541.1 | integrase catalytic subunit | VFG0649 | Protein | 5e-51 | 48 |
| Rsph17025_4393 | YP_001170541.1 | integrase catalytic subunit | VFG0621 | Protein | 1e-51 | 48 |
| Rsph17025_4393 | YP_001170541.1 | integrase catalytic subunit | VFG0608 | Protein | 1e-51 | 48 |
