Gene Information

Name : Rsph17025_3787 (Rsph17025_3787)
Accession : YP_001169951.1
Strain :
Genome accession: NC_009429
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 691521 - 692210 bp
Length : 690 bp
Strand : +
Note : -

DNA sequence : 
GTGAGCGGGCACATCCTGATCGTCGACGACGAAATGCCGATCCGCCGCCTTCTTCGTGTTGCCATCGAGCGCAGCGGATA
TGCGACCATCGAGGCCGATTGCGGGGCGGCCGCGCTCGATGCCCTGCGCCGGTCCGTGCCGAAGCTCGTACTGTTGGATC
TCGGCCTACCAGACCGCGACGGGCTGGAACTGATCGGGGCGTTCCGCGAGAAGCTTGTGCCGATCATCGTGCTGACGGCC
AGAGAGGCATCGAGCGAGAAAGTCGCTGCCCTTGACCTTGGTGCCGATGACTACGTCACCAAGCCGTTCGACAGCGAGGA
GCTCATGGCCCGGATACGGTCATGCCTGCGCAGGGCAGATCAGAGCCATGGGCACCTGCGCAAGCTGACGGTCGGACCCG
TCACCATCGACCTCGATGCTCATGGCGCATGGATGAATGGCGCCGAGGCCAAACTCACACCGAAGGAGTTCACACTTCTG
GCCGTTCTGGCCAGCCATCCGGGCAAGGTCCTGACCCATACGCACCTTCTGCGAGAAGTCTGGGGCCCGGCTCACACCGA
CCATGTCGAATATCTACGCGTTACCGTCAGGTCCTTGCGCAAGAAGCTCGAAGAAGACCCGTCGGCTCCGAGGCTGATCC
AGAATGAGCCGGGGGTCGGGTATCGGCTGCGGGACCCAGGCGGGGCGTAG

Protein sequence : 
MSGHILIVDDEMPIRRLLRVAIERSGYATIEADCGAAALDALRRSVPKLVLLDLGLPDRDGLELIGAFREKLVPIIVLTA
REASSEKVAALDLGADDYVTKPFDSEELMARIRSCLRRADQSHGHLRKLTVGPVTIDLDAHGAWMNGAEAKLTPKEFTLL
AVLASHPGKVLTHTHLLREVWGPAHTDHVEYLRVTVRSLRKKLEEDPSAPRLIQNEPGVGYRLRDPGGA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SH0031 YP_251946.1 hypothetical protein Not tested SCCmec Protein 8e-30 43
kdpE BAA82188.1 KDP operon transcriptional regulatory protein KdpE Not tested Type-II SCCmec Protein 4e-29 43
kdpE YP_039536.1 response regulator protein Not tested Type-II SCCmec Protein 6e-29 43
kdpE NP_370594.1 transcriptional regulator kdpE Not tested Type-II SCCmec Protein 6e-29 43
kdpE NP_373306.1 hypothetical protein Not tested Type-II SCCmec Protein 6e-29 43
kdeP YP_190033.1 DNA-binding response regulator KdeP Not tested Type-II SCCmec Protein 6e-29 43
EF0571 NP_814337.1 DNA-binding response regulator Not tested Not named Protein 6e-30 41
ef0091 AAM75294.1 EF0091 Not tested Not named Protein 4e-30 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rsph17025_3787 YP_001169951.1 transposase NC_012469.1.7685629. Protein 2e-30 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rsph17025_3787 YP_001169951.1 transposase VFG1390 Protein 9e-26 41