Gene Information

Name : Rsph17025_3561 (Rsph17025_3561)
Accession : YP_001169735.1
Strain :
Genome accession: NC_009429
Putative virulence/resistance : Unknown
Product : IstB ATP binding domain-containing protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4584
EC number : -
Position : 447449 - 448267 bp
Length : 819 bp
Strand : +
Note : PFAM: IstB domain protein ATP-binding protein

DNA sequence :
ATGCGGATTGCGGAGGCGGCCCCGCGGCGGCTGCCGGCGACGGTGTATCTGCGCGAGCTTCGCGAACGCGGCTACGAGGG
CGGCATCTCGATCCTGAAGGACTGGCTGGCGGAGCAGCATCCGGCCGTTCCCGCGCCGCCGATCGTGCGGTTCGAGACCC
CGCCCGGGCGGCAGGCGCAGGCGGACTGGACGGCGATCCGGCGCGGCCGGAACAAGTTGTCGGCCTTTGTCGGCACGCTG
GGCTTCAGCCGGCTGTCGTTCGTCTGGTTCGCCGACAACGAAAGGTTCGACACGCTGATCGAGGCGCACGAGCGGTTCTT
CGACGCGCTCGGCGGGGTGCCGCACACGATCCTCTACGACAACATGAAGACGGTGCTGATCGACCGCGACGCCTATGGCC
CCGGCCAGCACCGGTTCAACGAAGGGTTCCGGGACTTCGCCAGGCACCACGGCTTCGGCCCGCGGATGTGCGCCCCGTAT
CGGGCGCAGACGAAAGGCAAGGTCGAGCGGTTCAACCGCTATCTCAAGGAGAGCTTTGTCTGGCCGCTGGAGAGCCGGCT
GAGGGGCCAGGGGCTGATCCTTGACGCCGCGACGGCCAACGCGCGTGTCGGCGCGTGGCTGCGCGACGTGGCCAACCTGC
GCATCCATGCCGAGACGAAGGAACGCCCGGTCGACCGCTTCGACATGGAGAAGGCGCAGCTCCTGCCCCGCGGTCCGGCC
TGGACCGGCATCGTGCCCACGGTGCCCGCGATCCTGCACGACATTCACGTCCCCCAGCATGACCTGTCGGTCTACGACGC
GATCGGGAGGCTGGCATGA

Protein sequence :
MRIAEAAPRRLPATVYLRELRERGYEGGISILKDWLAEQHPAVPAPPIVRFETPPGRQAQADWTAIRRGRNKLSAFVGTL
GFSRLSFVWFADNERFDTLIEAHERFFDALGGVPHTILYDNMKTVLIDRDAYGPGQHRFNEGFRDFARHHGFGPRMCAPY
RAQTKGKVERFNRYLKESFVWPLESRLRGQGLILDAATANARVGAWLRDVANLRIHAETKERPVDRFDMEKAQLLPRGPA
WTGIVPTVPAILHDIHVPQHDLSVYDAIGRLA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
s0035 CAD33773.1 ORF A protein Not tested PAI I 536 Protein 4e-55 47
y1094 CAD42088.1 OrfA protein of IS100 transposase Not tested PAI II 536 Protein 4e-55 47
orfA CAE85182.1 OrfA protein, transposase, IS100 Not tested PAI V 536 Protein 4e-55 47
y1094 CAC43410.1 IS100 transposase; transposase ORFA Not tested PAI III 536 Protein 4e-55 47
y1093 CAD33720.1 ORF A protein Not tested PAI I 536 Protein 3e-55 47
unnamed CAD33718.1 hypothetical protein Not tested PAI I 536 Protein 1e-40 46
unnamed CAB46599.1 IS100 transposase Not tested HPI Protein 2e-54 46
api83 CAF28557.1 transposase Not tested YAPI Protein 2e-54 46
y1093 YP_002346890.1 transposase for insertion sequence IS100 Not tested HPI Protein 2e-54 46
y2411 NP_669718.1 transposase Not tested HPI Protein 2e-54 46
YPTB1585 YP_070113.1 transposase Not tested HPI Protein 2e-54 46
unnamed CAA21403.1 - Not tested HPI Protein 2e-54 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rsph17025_3561 YP_001169735.1 IstB ATP binding domain-containing protein VFG1607 Protein 2e-55 47
Rsph17025_3561 YP_001169735.1 IstB ATP binding domain-containing protein VFG1514 Protein 2e-55 47
Rsph17025_3561 YP_001169735.1 IstB ATP binding domain-containing protein VFG1461 Protein 2e-55 47
Rsph17025_3561 YP_001169735.1 IstB ATP binding domain-containing protein VFG1626 Protein 2e-55 47
Rsph17025_3561 YP_001169735.1 IstB ATP binding domain-containing protein VFG1459 Protein 7e-41 46