Gene Information

Name : Rsph17025_0249 (Rsph17025_0249)
Accession : YP_001166464.1
Strain : Rhodobacter sphaeroides ATCC 17025
Genome accession: NC_009428
Putative virulence/resistance : Virulence
Product : periplasmic solute binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0803
EC number : -
Position : 242693 - 243592 bp
Length : 900 bp
Strand : -
Note : PFAM: periplasmic solute binding protein

DNA sequence : 
ATGAATGATCGCAGAACGGGGATGGCGGCCCTGCTCATTGCACTGGGGCTGGCGTTGCCCGCATCAGCCGAGGATGGACG
CATGAAGGTCGCCACGACCTTCACGGTGATCGCCGACATGGCGCAGAACGTGGCGGGAGAGGCGGCCGAGGTGGTCTCGA
TCACCCGCCCGGGGGCCGAGATCCACGGATATGAGCCCACGCCTCAGGACATCGTGCGGGCATGGGACGCGGACCTGATC
CTGTGGAACGGGCTCAATCTCGAACTCTGGTTCGAGCAGTTCCTGTCGAATCTGGAGGACGTGCCCTCGGTGACGGTCAG
CGAGGGGATCGAGCCCGTCGCCGTTGCAGGGGGCGAGTATCGCGGCAGGCCCAATCCCCACGCCTGGATGGGGCTCGACA
ATGCGATGATCTACATCGACAACATCGCCGCGGCCTTTGCCGAGCACGATCCCTCGAACGCCGACATCTACCGCGCCAAT
GCGGAAAACTACAAGGAACGGCTGCGCGCGACGATCGGGCCGCTGCGCGAGCGCATCGCCGCGCTGCCCGAGGATCGCCG
CTGGCTCGTGAGCTGCGAGGGCGCCTTTTCCTATCTTGCGCAAGACTTCGGGCTGAAGGAGCTCTATCTCTGGCCAATGA
ATACGGATCAGGTGGGAACGCCGCAGCAGGTGCGGGCCGTGATCGACGGGGTGAGGCAGCACCGGATTCCGGCTGTCTTC
TGCGAGAGCACGGTGAACAACGCGCCCGCGCGGCAGGTCGCGCGCGAAACGGGCGCCGCCTATGGCGGGGTGCTCTATGT
GGACAGCCTGAGCGCGAGGGACGGGCCGGTGCCGACCTACCTCGACCTGCTGCGCGTCACCGCCGAGACAATCGCCGCCG
GACTGGAGGGCAGCCAGTGA

Protein sequence : 
MNDRRTGMAALLIALGLALPASAEDGRMKVATTFTVIADMAQNVAGEAAEVVSITRPGAEIHGYEPTPQDIVRAWDADLI
LWNGLNLELWFEQFLSNLEDVPSVTVSEGIEPVAVAGGEYRGRPNPHAWMGLDNAMIYIDNIAAAFAEHDPSNADIYRAN
AENYKERLRATIGPLRERIAALPEDRRWLVSCEGAFSYLAQDFGLKELYLWPMNTDQVGTPQQVRAVIDGVRQHRIPAVF
CESTVNNAPARQVARETGAAYGGVLYVDSLSARDGPVPTYLDLLRVTAETIAAGLEGSQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 1e-86 64
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 1e-86 64
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 1e-86 64
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 1e-86 64
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-86 64

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rsph17025_0249 YP_001166464.1 periplasmic solute binding protein BAC0349 Protein 7e-87 64
Rsph17025_0249 YP_001166464.1 periplasmic solute binding protein BAC0439 Protein 2e-84 60

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rsph17025_0249 YP_001166464.1 periplasmic solute binding protein VFG0525 Protein 6e-87 64