Gene Information

Name : Rsph17025_0248 (Rsph17025_0248)
Accession : YP_001166463.1
Strain : Rhodobacter sphaeroides ATCC 17025
Genome accession: NC_009428
Putative virulence/resistance : Virulence
Product : ABC transporter-like protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 241806 - 242696 bp
Length : 891 bp
Strand : -
Note : PFAM: ABC transporter related; SMART: AAA ATPase

DNA sequence :
GTGAAACCCGAGAGGCCGGCGATCGCGACAGACGCCGAGGGCTTGTCCGTCAACGACGTGACCGTGACCTACCGCAATGG
CCACACCGCCCTGCGCCACGCGAGCTTTGCGCTGCCGCGCGGCACGGTGGCGGCCCTCGTGGGTGTGAACGGCGCGGGCA
AGTCCACGATCTTCAAGGCGATCATGGGCCTCGTGCCCATCGGCTCTGGCGAGATCCGGCTGCTCGGCCGGACGGTTCCG
GAGGCGCTGCGGCAGAACCTCGTGGCCTATGTCCCGCAGTCTGAGGAGGTGGACTGGAGCTTTCCGGTTCTCGTCGAGGA
TGTGGTGATGATGGGGCGCTACGGCCACATGGGCTTCCTGCGCCGCCCGAAGGCCGCGGACCGGGCGGCCGTGAGCGAGG
CGCTGGAGCGCGTCGGCATGGCGGACCTGCGCCACCGCCAGATCGGCGAGCTGTCGGGCGGCCAGAGGAAGCGCGTGTTC
CTGGCGCGCGCGCTGGCGCAGGAGGGGCAGGTGATCCTGCTTGACGAGCCCTTCACCGGCGTCGATGTCCAGACCGAGGC
CGAGATCATCGCGCTCCTGCGCGAACTGAGGGCCGAGGGGCGGGTCATGCTGGTCTCGACCCACAACCTCGGCTCGGTCC
CCGAATATTGCGACCGGACCGTGCTGGTCAAGGGCACGGTGCTGGCCCATGGGCCGACCGAAACCACCTTCACCCACGCC
AACCTCGAGGAGGCGTTCGGCGGCGTGCTGCGCCGCTTTACCCTGTCGGGCGCCCTGCTGCATGACGACGACGACCCGCG
CGAGGTCAGCATCCTCACCGACGACGAGCGGCCCTTCGTGCAATATGGCGGCCGCACCCACCGGCAGGAGGGCGAGGATG
AGCGCGGCTGA

Protein sequence :
MKPERPAIATDAEGLSVNDVTVTYRNGHTALRHASFALPRGTVAALVGVNGAGKSTIFKAIMGLVPIGSGEIRLLGRTVP
EALRQNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGFLRRPKAADRAAVSEALERVGMADLRHRQIGELSGGQRKRVF
LARALAQEGQVILLDEPFTGVDVQTEAEIIALLRELRAEGRVMLVSTHNLGSVPEYCDRTVLVKGTVLAHGPTETTFTHA
NLEEAFGGVLRRFTLSGALLHDDDDPREVSILTDDERPFVQYGGRTHRQEGEDERG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 1e-90 72
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 1e-90 72
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 3e-91 72
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-91 72
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 2e-91 72

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rsph17025_0248 YP_001166463.1 ABC transporter-like protein BAC0350 Protein 1e-91 72
Rsph17025_0248 YP_001166463.1 ABC transporter-like protein BAC0440 Protein 3e-90 64
Rsph17025_0248 YP_001166463.1 ABC transporter-like protein BAC0400 Protein 1e-52 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rsph17025_0248 YP_001166463.1 ABC transporter-like protein VFG0526 Protein 1e-91 72