Gene Information

Name : Rsph17025_0247 (Rsph17025_0247)
Accession : YP_001166462.1
Strain : Rhodobacter sphaeroides ATCC 17025
Genome accession: NC_009428
Putative virulence/resistance : Virulence
Product : ABC-3 protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 240959 - 241819 bp
Length : 861 bp
Strand : -
Note : PFAM: transport system permease protein; ABC-3 protein

DNA sequence : 
ATGAGCGCGGCTGAGCTGTGGGAGCCCTTCCTCTACGGCTACATGACCAACGCCATGTGGGTCTCGGCGCTGGTGGGGGC
GGTCTGCGCCTTCCTGTCCTGCTTCCTGATGCTCAAGGGCTGGTCGCTGATCGGCGACGCGCTCTCGCATTCGGTGGTGC
CGGGCGTGGCCGGGGCCTATGTGCTGGGCCTGCCCTTTGCGATCGGCGCCTTCCTTGCGGGCGGGCTGGCGGCGGGGGCC
ATGCTCTTCCTGTCGAACCGGAGCGGGCTCAAGACCGACGTGGTGATCGGGCTGATCTTCACCTCGTTCTTCGGGCTGGG
GCTGTTCATGATCTCGGTCGATCCGATGTCCGTCTCGATCCAGACCATCGTGATGGGCAATATCCTCGCCATCTCGGCCT
TCGACACGGTGCAGCTCGTGATCATCGGGATCGTGTCGCTGGCGATCCTGCTCGCGAAATGGAAGGATCTGATGGTGACC
TTCTTCGACGAGACCCATGCGCGTTCGATCGGCATCCGCACCGGCGCGCTGAAGGTGCTGTTCTTCACGCTGCTTTCGGC
CTCGGTCGTGGCGGCGATGCAGACGGTGGGGGCCTTCCTCGTCATTGCCATGGTGGTGACACCGGGGGCCACGGCTTACC
TGCTCTGTGACCGCTTTCCGCGCCTTCTGGCGCTTGCGACCGGCATCGGGGCCACGACCGGCTTCGCCGGGGCCTACCTG
TCCTACTTCCTCGACGGGGCGACGGGGGCGGTGATCGTGACGCTGCAGACGGCCCTCTTCCTGCTGGCCTTCACCTTCGC
GCCGAGGCACGGGATGCTGGCCGCGCGCCGCCGCGCGGCCGAGGCGCTGGAGCAGCCATGA

Protein sequence : 
MSAAELWEPFLYGYMTNAMWVSALVGAVCAFLSCFLMLKGWSLIGDALSHSVVPGVAGAYVLGLPFAIGAFLAGGLAAGA
MLFLSNRSGLKTDVVIGLIFTSFFGLGLFMISVDPMSVSIQTIVMGNILAISAFDTVQLVIIGIVSLAILLAKWKDLMVT
FFDETHARSIGIRTGALKVLFFTLLSASVVAAMQTVGAFLVIAMVVTPGATAYLLCDRFPRLLALATGIGATTGFAGAYL
SYFLDGATGAVIVTLQTALFLLAFTFAPRHGMLAARRRAAEALEQP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 2e-65 74
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 2e-65 74
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-65 74
sitC NP_461784.1 permease Virulence SPI-1 Protein 1e-65 74
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 1e-65 74
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 1e-30 43
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 1e-30 43
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 9e-31 42
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-30 42
sitD NP_461785.1 permease Virulence SPI-1 Protein 1e-30 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rsph17025_0247 YP_001166462.1 ABC-3 protein BAC0351 Protein 6e-66 74
Rsph17025_0247 YP_001166462.1 ABC-3 protein BAC0441 Protein 5e-56 65
Rsph17025_0247 YP_001166462.1 ABC-3 protein BAC0352 Protein 6e-31 42
Rsph17025_0247 YP_001166462.1 ABC-3 protein BAC0442 Protein 1e-27 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rsph17025_0247 YP_001166462.1 ABC-3 protein VFG0527 Protein 6e-66 74
Rsph17025_0247 YP_001166462.1 ABC-3 protein VFG0528 Protein 5e-31 42