Gene Information

Name : Rsph17025_0246 (Rsph17025_0246)
Accession : YP_001166461.1
Strain : Rhodobacter sphaeroides ATCC 17025
Genome accession: NC_009428
Putative virulence/resistance : Virulence
Product : ABC-3 protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 240114 - 240962 bp
Length : 849 bp
Strand : -
Note : PFAM: ABC-3 protein

DNA sequence : 
ATGATCGACACGCTCCTCTTTCCGTTCCAGTTTCCCTTCATGCAGAACGCCTTCCTCGTCTGCCTCCTGGTGGCGGTGCC
GACGGCGCTTCTGTCCTGCCTCCTCGTCCTCAAGGGCTGGGCGCTGATGGGCGACGCGATCAGCCACGCGATCCTGCCGG
GCGTGGTGCTGGCCTACATCACCGGGATCCCGCTTCTCGTCGGGGCCTTCGGCGCGGGCATGGCCTGTGCGCTCGCCACG
GGCTTTCTGGCCGGCAACAGCCGGGTGAAGCCGGACACGGTGATGGGGGTGGTGTTCTCGGGCATGTTCGGGCTGGGGCT
GCTGCTCTACACCGCCGTCGAGACGGACGTGCATCTCGACCATATCCTTTTTGGCAACATGCTGGGCGTGGGGCGCGAGG
ATCTTCTGGTGGCGGGCGCAATCTCGGCGGGGGTGACGGGCGCGCTCCTGCTGACGTGGAAGGACCTGCTGCTGCATGCC
TTCGATCCGGCGCAGGCACGGGCGTCGGGCCTGCGGGTGGGGCTGCTGCATTACGGGCTTCTGACGGCGCTGGCGCTGAC
CATCGTGGCCACGCTGACGGCGACGGGCCTCATCCTCGCCGTGGGCCTGCTGATCGCGCCGGGGGCCATCGCCTTCCTGA
CGGTGCGCCGCTTCGGGCCCATGCTGATCGTGGCGGTGGCCGTCTGCCTGGCTGCGATGCTGGCCGGCACCTATGCGAGC
TTCTTTCTCGACAGCGCCCCGGCCCCCACCATCATCCTGATCCTGACCGGGATCTTCGTGCTGGTCTTTCTCGACCGGCT
TCGTCGGAACCGGCGCGCGGCGCTCAGCGCGGCAGCCCCGCCTCGCTGA

Protein sequence : 
MIDTLLFPFQFPFMQNAFLVCLLVAVPTALLSCLLVLKGWALMGDAISHAILPGVVLAYITGIPLLVGAFGAGMACALAT
GFLAGNSRVKPDTVMGVVFSGMFGLGLLLYTAVETDVHLDHILFGNMLGVGREDLLVAGAISAGVTGALLLTWKDLLLHA
FDPAQARASGLRVGLLHYGLLTALALTIVATLTATGLILAVGLLIAPGAIAFLTVRRFGPMLIVAVAVCLAAMLAGTYAS
FFLDSAPAPTIILILTGIFVLVFLDRLRRNRRAALSAAAPPR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 4e-54 62
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 3e-54 62
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 3e-54 62
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 7e-54 62
sitD NP_461785.1 permease Virulence SPI-1 Protein 9e-54 62

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rsph17025_0246 YP_001166461.1 ABC-3 protein BAC0352 Protein 4e-54 62
Rsph17025_0246 YP_001166461.1 ABC-3 protein BAC0442 Protein 1e-41 55

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rsph17025_0246 YP_001166461.1 ABC-3 protein VFG0528 Protein 4e-54 62