|
Name : Rsph17025_1811 (Rsph17025_1811) Accession : YP_001168008.1 Strain : Rhodobacter sphaeroides ATCC 17025 Genome accession: NC_009428 Putative virulence/resistance : Unknown Product : integrase catalytic subunit Function : - COG functional category : L : Replication, recombination and repair COG ID : COG4584 EC number : - Position : 1854220 - 1855752 bp Length : 1533 bp Strand : - Note : PFAM: Integrase, catalytic region DNA sequence : ATGAGACGATTGCCGATGCGCAAGATTGCAGAAGCCCTTCGCCTGAAGGCGGCCGGGTTGGCGACCCGGAAGATCGCAGC AAGCCTGAACGTGGGCCAGTCGACGGTCAGCGAGTATCTCAAGCGCGCCGAGCGGGCGGGCTTGGTCTGGCCACTGCCTG ATGGCCTGGACGAAGCCGCACTGGAGCGGCGGCTCTTCGCACCAACGGGCGGAAGGACCCGCCGCGGGCTGGCGGTTCCG GACTGGCCGGCGGTGCATCGGGCACTACGCCGCAAGGGCGTCACCCTGGCCTTGATCTGGGAGGACTATCGCGCCGCCCA TCCCCATGATGGTTATGGCTACAGCCGGTTCTGCGAACTCTACAGCCGTTGGGAAGGGAAGCTCTCGCCCACGATGCGCC AGCATCACGTCGCCGGCGAGCGCGTGTTCGTCGATTACGCGGGAGATGCCGTGGAGATCATCGACGGTGCGACCGGCGAG GTGCGGGCCGCGCAGATCTTCGTCGGCGTGCTGGGCGCCTCGAACTACACCTATGTTGAGGCGACCTGGAGCCAGAGCCT GCCGGACTGGATCGGCGCCCATGTCCGCATGTTCGACTTCTTCGGCGGCGTGCCCGAGCAGATCGTCTCCGACAACCTGA AGGCGGGTGTCACCAAGGCCTGCTTCCACGAGCCGCGGATCAACCGGACCTACGCCGAGATGGCCGCCCATTACGGCACC GCGGTGCTCCCGGCGCGCCCCTACAAGCCGCGCGACAAGGCCAAGGCCGAGGTCGGCGTGCTGCTGGTTCAGCGCTGGAT CATCGCGCGCTTGCGCAGGCGGCGGTTCTTCTCGCTTGCTGAGTTGAACGCGGCGATCCGCGACCTGCTGCCCGGTCTGA ACGCCAAGGTGACCCGCCACCTCGGCGCCAGCCGCCGGAATCTGTTCGAGCAGCTCGACCGGCCGGCCCTGCAGCCCCTG CCGGCCAGCCCCTACGAGTATGCCGACTGGCTCGAGCGCCGCGTCGGTCTCGATTATCATGTCGAGGTCGAGAAGCACTA CTACTCGGTGCCCCACCAGCTTCTGAAGAAGACGCTCTGGGCCCGGATCACCTCGCGGACCGTCGAAGTCTTCCACGACG GCCAGCGTGTCGCGTCCCATATCCGCAGCGCGGGCGACTGCCGACACACGACGGTCGCCGTCCACATGCCCGCCAGCCAC CGCCGCTATGCCGGGCTCACCCCCGCCGAACTGCGGCGCAAGGCCGGGAAGATCGGCCCGCACACGGCGGCGCTGGTGGA GCTGATCCTGCAAGCAAAGACCCATCCCGAGCAGGGCTTCCGGGCCTGCGTGGGGATCGTGGATCTGGCCAAGCCTCATG GGCGTGACGCGCTCGAGGCCGCCTGCCTGCGCGCCCGGGAGATTGGCGGGCTGTCCTACAGCTCGGTCAAGTCGATCCTC CGGAACAACCTGCATCGCCAACGGCCCGAGACGCCCGCGGAGGGGCCGGCGATCACGCACCCCAACATCCGCGGCGCCAG CTACTTCCACTGA Protein sequence : MRRLPMRKIAEALRLKAAGLATRKIAASLNVGQSTVSEYLKRAERAGLVWPLPDGLDEAALERRLFAPTGGRTRRGLAVP DWPAVHRALRRKGVTLALIWEDYRAAHPHDGYGYSRFCELYSRWEGKLSPTMRQHHVAGERVFVDYAGDAVEIIDGATGE VRAAQIFVGVLGASNYTYVEATWSQSLPDWIGAHVRMFDFFGGVPEQIVSDNLKAGVTKACFHEPRINRTYAEMAAHYGT AVLPARPYKPRDKAKAEVGVLLVQRWIIARLRRRRFFSLAELNAAIRDLLPGLNAKVTRHLGASRRNLFEQLDRPALQPL PASPYEYADWLERRVGLDYHVEVEKHYYSVPHQLLKKTLWARITSRTVEVFHDGQRVASHIRSAGDCRHTTVAVHMPASH RRYAGLTPAELRRKAGKIGPHTAALVELILQAKTHPEQGFRACVGIVDLAKPHGRDALEAACLRAREIGGLSYSSVKSIL RNNLHRQRPETPAEGPAITHPNIRGASYFH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAC39294.1 | hypothetical protein | Not tested | LPA | Protein | 2e-104 | 48 |
| ORF_6 | AAZ04417.1 | putative transposase subunit | Not tested | PAI I APEC-O1 | Protein | 1e-104 | 48 |
| APECO1_3528 | YP_854247.1 | transposase for ISEc12 | Not tested | PAI I APEC-O1 | Protein | 1e-104 | 48 |
| VPI2_0005c | ACA01822.1 | IstA | Not tested | VPI-2 | Protein | 2e-103 | 45 |
