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Name : smpB (Rsph17025_0123) Accession : YP_001166339.1 Strain : Rhodobacter sphaeroides ATCC 17025 Genome accession: NC_009428 Putative virulence/resistance : Unknown Product : SsrA-binding protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0691 EC number : - Position : 127075 - 127548 bp Length : 474 bp Strand : - Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca DNA sequence : ATGGTCAAGCACTCCGATCCCAACAGCAAGCTCATCGCCGAGAACCGGCGCGCCCGCTTCGATTACTTCATCGAGGAGGA GATCGAGGCCGGGATCATTCTCATGGGCTCCGAGGTCAAGTCGCTCCGGCAGGGCGGCTCGAACATCGGTGAAAGCTATG CCTCGGTCGAAAATGGCGAGCTGTGGCTGATCAACGGCTACATCGCCCCCTACCTGCAGGCCAAGACCTGGGGCCACGAA GAGCGGCGCAAGCGCAAGCTGCTCGTCTCGCGGCGCGAACTGGCCCGGCTCTGGAACGCGACCGCCCGCGAAGGCATGAC CATCGTGCCGATCCGCATGTATTTCAACGACCGCGGAATCGTGAAGCTCAAGATCGGCATCGCCAAGGGCAAGAAGCTGT CCGACAAGCGCGCGACCGAAGCCAAGCGCGACTGGGGCCGCGAAAAGCAGCGGCTGCTCAAGCAACATTCCTGA Protein sequence : MVKHSDPNSKLIAENRRARFDYFIEEEIEAGIILMGSEVKSLRQGGSNIGESYASVENGELWLINGYIAPYLQAKTWGHE ERRKRKLLVSRRELARLWNATAREGMTIVPIRMYFNDRGIVKLKIGIAKGKKLSDKRATEAKRDWGREKQRLLKQHS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| smpB | NP_230495.1 | SsrA-binding protein | Not tested | VPI-1 | Protein | 7e-18 | 49 |
