Gene Information

Name : araD (YPDSF_0904)
Accession : YP_001162277.1
Strain : Yersinia pestis Pestoides F
Genome accession: NC_009381
Putative virulence/resistance : Unknown
Product : L-ribulose-5-phosphate 4-epimerase
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG0235
EC number : 5.1.3.4
Position : 1029680 - 1030375 bp
Length : 696 bp
Strand : -
Note : catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source

DNA sequence :
ATGCTCAACGAACTGAAGCAGCAAGTTCTTGCCGCTAATCTTGCTCTACCGCGCCATAATCTGGTGACATTCACTTGGGG
TAATGTTAGTGCTATCGATCGCCAAAAGGGTTTACTGGTGATTAAGCCTTCAGGTGTGGAATATGCGTCCATGACACTGG
ATGATATGGTGGTCGTGGAGTTGGAGAGCGGCAACGTCGTTGAGGGCAGCAAAAAACCATCATCAGACACGGATACTCAC
CGCGTGCTGTATCTTAATTTCCCCCAAATTGGGGGCATAGTGCATACCCACTCCCGTCATGCAACTATTTGGGCGCAGGC
GGGGCTAGACTTGCCTGCTTGGGGGACAACCCATGCTGATTACTTCTATGGATCCATCCCCTGTACCCGTTTGATGACAC
ATGAAGAAATTGCGGGTCGTTATGAATGGGAAACCGGTAATGTCATCGTTGATACTTTCCATGAAAGGGGCATCACCCCA
GATGCTGTACCTGCGGTGTTGGTGAACTCTCATGGGCCATTTGCCTGGGGTAGCAGTGCGGAGAATGCAGTACACAATGC
GGTAGTCTTGGAAGAGTTAGCGTATATGGGCATTTTCTCGCGTCAATTGAACCCGCAGTTGGGCGATATGCAACCGCAAC
TGCTGGATAAGCATTACTTACGTAAACATGGCAAGGATGCGTACTACGGCCAATAA

Protein sequence :
MLNELKQQVLAANLALPRHNLVTFTWGNVSAIDRQKGLLVIKPSGVEYASMTLDDMVVVELESGNVVEGSKKPSSDTDTH
RVLYLNFPQIGGIVHTHSRHATIWAQAGLDLPAWGTTHADYFYGSIPCTRLMTHEEIAGRYEWETGNVIVDTFHERGITP
DAVPAVLVNSHGPFAWGSSAENAVHNAVVLEELAYMGIFSRQLNPQLGDMQPQLLDKHYLRKHGKDAYYGQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
araD YP_281517.1 L-ribulose-5-phosphate 4-epimerase Not tested Not named Protein 3e-59 57