Gene Information

Name : YPDSF_0530 (YPDSF_0530)
Accession : YP_001161914.1
Strain : Yersinia pestis Pestoides F
Genome accession: NC_009381
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG2814
EC number : -
Position : 590048 - 591271 bp
Length : 1224 bp
Strand : +
Note : -

DNA sequence :
ATGCGCATATCCTCAGAGTCTGACGCTCGCTCAAGCGGGCTTACATCGTCTACCCATTGGCCTTTAGCGTTCTGCGTTGG
GTTACTGGGCATCGGGCAAAACGGTTTATTAGTGGTGTTACCGGTATTGGTAAGCCGCACTCATCTGTCATTGTCGGTGT
GGGCGGGTCTATTGACACTTGGCTCAATGCTATTTTTAGTGGGATCGGCATGGTGGGGCCGGCAATCGGAGATCCGTGGC
TGCAAATTTGTTGTCATCATGGCACTGGCAGGTTACTTGCTTAGCTTTGTTTTATTGGCGCTGGCGGTGTGGGGGTTGTC
AGCAGGGTGGTTATCGGAAATGGCCGGTCTGGGCTGGCTAATCGTGGCTCGTATTATTTATGGCCTGACCGTCTCTGGTA
TGGTGCCCGCTAGCCAGACCTGGGCACTACAGCGTGCCGGTTATGAGCAACGGATGGCGGCGCTGGCGACCATCAGTTCG
GGGCTGAGCTGTGGCCGTCTGCTCGGCCCATTGTGTGCCGCCCTCGCGCTCTCAATACACCCGATAGCCCCCCTGTGGCT
GATGGCAATTGCACCACTGATCGCACTGCTGGTGGTGTATCGCCAATACAATGACCCGCCGTTACCCCCAGTGGTGCATC
AACAAAACCGTTTACGCCTCAATATGTTGCCTTATTTACTGTGCGCGTTGTTGCTAGCGGCAACCGTCAGCCTGATGCAA
CTTGGCCTGGCACCTCACTTAAGTCGATTGTTTAGCCATTCGGCCACCACGGTGAGCCACCACGTGGCCATTTTGCTTAG
CATAGCCGCGGGTTGTACGTTGCTGGCACAGTTTCTGGTGGTTCGTCCACAACGTTTTACGCCACCTCAGTTGCTGCTAG
TGGCAGCCTTGCTCATGGTGCTTGGCTTGGGGCTGATGTGTGTTCAACCGCTGGTATTATTCTATCTAGGTTGTGCGCTG
GCTTCTTTCGGCGCCGCGATGGCGACACCGGGTTACCAACTGATGTTGAACGACCGGTTATCTACTGGCAAAGGCTCCGG
CGTGATCGCTACCAGCCATACATTGGGCTATGGCATGAGTGCATTGATGGTGCCGGTAGTCGCAAAATTTTATGGTGAGT
CACAGTTGGTAGCCGCGGCGTTCATGATGGCCATTTTGTTGGGGGGAATCAGTGGCTGGCTGTGGTGCCAGCATCGAACA
ACCGCCCATTCTGTGGGAGAGTAA

Protein sequence :
MRISSESDARSSGLTSSTHWPLAFCVGLLGIGQNGLLVVLPVLVSRTHLSLSVWAGLLTLGSMLFLVGSAWWGRQSEIRG
CKFVVIMALAGYLLSFVLLALAVWGLSAGWLSEMAGLGWLIVARIIYGLTVSGMVPASQTWALQRAGYEQRMAALATISS
GLSCGRLLGPLCAALALSIHPIAPLWLMAIAPLIALLVVYRQYNDPPLPPVVHQQNRLRLNMLPYLLCALLLAATVSLMQ
LGLAPHLSRLFSHSATTVSHHVAILLSIAAGCTLLAQFLVVRPQRFTPPQLLLVAALLMVLGLGLMCVQPLVLFYLGCAL
ASFGAAMATPGYQLMLNDRLSTGKGSGVIATSHTLGYGMSALMVPVVAKFYGESQLVAAAFMMAILLGGISGWLWCQHRT
TAHSVGE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAD54670.1 unknown Not tested SHI-2 Protein 2e-66 59
shiF AAD44744.1 ShiF Virulence SHI-2 Protein 9e-67 59
shiF YP_002414047.1 putative membrane transport protein, major facilitator superfamily Not tested Not named Protein 4e-66 59
imm NP_839224.1 membrane transport protein Not tested SHI-2 Protein 1e-66 59
imm NP_709453.1 membrane transport protein Not tested SHI-2 Protein 1e-66 59

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPDSF_0530 YP_001161914.1 hypothetical protein VFG0614 Protein 5e-67 59