|
Name : YPDSF_3705 (YPDSF_3705) Accession : YP_001165028.1 Strain : Yersinia pestis Pestoides F Genome accession: NC_009381 Putative virulence/resistance : Virulence Product : secretion system apparatus protein SsaV Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4789 EC number : - Position : 4255888 - 4257903 bp Length : 2016 bp Strand : - Note : with SsaC forms part of a protein export system across the inner and outer cell membranes; part of the Salmonella pathogenicity island 2; part of the type III secretion system DNA sequence : ATGATCACCGCGCGGCAGGATATTTTTTTAGCGGTCATGTTGCTGGTGGCGGTCTTTATGATGATCCTGCCACTGCCTAC GACGATGGTGGATTTACTGATCGCCATCAATCTTGCCTTCTCCGTCATTCTCTTAATGATCTCGATCTATCTGCGCGATC CTTTGGAGTTCTCCGTCTTCCCGTCATTACTGTTGATCACCACCCTTTATCGATTGGCACTGACGATCAGCACCACGCGA CTGGTGCTGTTGCAACATGATGCCGGTGAGATTGTCGAGGCATTCGGTCAGTTTGTCGTGGGCGGTAATCTGGCCGTCGG GATGATCATTTTTACCATTATCACGGTGGTCCAATTTATCGTGATTACCAAAGGTTCAGAGCGGGTTGCTGAGGTCAGTG CGCGCTTCTCACTTGATGGTATGCCGGGTAAGCAGATGAGCATCGACGGCGACATGCGTGCGGGTGCGATCGATTCGGTC GAAGCTAAACGGCTACGGGAGCGGGTACAAAAAGAGAGCCGCTTATTTGGTGCTATGGACGGTGCCATGAAGTTTGTTAA AGGGGATGCCATCGCTGGGATCATTGTCATTCTGATCAATATCATTGGCGGTATCACTATTGGTGTGATGCAACACAAGA TGTCCGCGGAAGAGGCGATGAATACCTACGCGGTATTATCGATAGGCGATGGATTGTGCGCCCAAATCCCTTCATTACTG ATCTCGATTACCGCCGGGATTATTGTTACCCGGGTTCCTGGCAGCAACAAACAGAGTCTGGCGAATGAGTTGGCGGTGCA GGTGGGGCGTCAACCGGATGCGCTGTGGTTAGCTGCCGCTATTCTGACGGTGTTCGCCCTGTTACCCGGCTTCCCGTTCC TGATCTTTATCACTTTGGCGGCCGCGGTTGCGGCTCCGGCTTTTTTACTTTATCGGAAGAACCGGCGGATATCGCAGGAT GGTCGCGCAAATGGAGGCAGTGAAGAGGGGGGGGCCACGGGGCAGCGTATGACGCCTGGTGCCGTACCGCTGATGCTGCA CTGTGCATCAAATTTACATCACCCGCATTTAGGGCGCGATATTGATGGCCTACGCTGGCGCTGGTTTGAGCATCTCGGTG TGCCATTGCCTGAGGTGGAGATCCGCTGTGATCCTACATTGGCAGAAAATACCTTATCGGTGCAGGTGTATCAGGAGCGG GTGCTGGAGGTTGTGTTACCGCCCGACAGCTTGTTACTGACACGGCCTTGCTCATCGTTAGTAACGAACAATCAGGTATT GGGCGCGAAGATGGGGTCATTTGATTGGCTGGATGCTAAACAGGCTATGCAAGCCAGAACCTTGGGTATCCCTTACGTGG AGGGGCATCAGCGGATCATCACCTGTCTGACCAGGGTGTTTGAACGGTACACCGCCGAATTTATCGGCGTACAGGAGACT CGCTACCTGATGGATGCCATGGAAGGGCGCTATGGTGAGTTAGTGAAAGAGCTACAACGGCAGATACCCGTCGGTAAAGT GGCTGAAATATTACAACGGCTGGTTGAGGAAAATATTTCCATTCGCGATTTACGGACTATTTTCGGCGCGTTGGTGGTTT GGGCACCGAAAGAAAAAGATATCGTGATGCTCACCGAATATGTCCGTATCGCCTTGCGCCGTCATTTGTGCCGTCGCTTT AGTCACAATAAAACCTGGATATCAGTATTACGCCTCGGTGATGGGGTGGAGCATCTGATCCGCGACTCTATCCGCCAGAC ATCATCAGGCACTTACTCCGCACTGGAGGAGAGGCAATCCCTCTTGATCCTCAACAAAATAAAAAACGCATTTGCTGAAA ACCAGGATGCGGTATTGCTTACCACCCTCGATGTTCGTCGCTTTGTCCGCAAAATTATTGAGCGGGATCTCTTCGTGCTA CCGGTACTTTCCTGGCAGGAACTGGGCGATGAAATGAATCTCAAGGTGGCGGGCACCATTGAACTGATTGGCGATGAACT TGATGAAACTGCCTGA Protein sequence : MITARQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFPSLLLITTLYRLALTISTTR LVLLQHDAGEIVEAFGQFVVGGNLAVGMIIFTIITVVQFIVITKGSERVAEVSARFSLDGMPGKQMSIDGDMRAGAIDSV EAKRLRERVQKESRLFGAMDGAMKFVKGDAIAGIIVILINIIGGITIGVMQHKMSAEEAMNTYAVLSIGDGLCAQIPSLL ISITAGIIVTRVPGSNKQSLANELAVQVGRQPDALWLAAAILTVFALLPGFPFLIFITLAAAVAAPAFLLYRKNRRISQD GRANGGSEEGGATGQRMTPGAVPLMLHCASNLHHPHLGRDIDGLRWRWFEHLGVPLPEVEIRCDPTLAENTLSVQVYQER VLEVVLPPDSLLLTRPCSSLVTNNQVLGAKMGSFDWLDAKQAMQARTLGIPYVEGHQRIITCLTRVFERYTAEFIGVQET RYLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRDLRTIFGALVVWAPKEKDIVMLTEYVRIALRRHLCRRF SHNKTWISVLRLGDGVEHLIRDSIRQTSSGTYSALEERQSLLILNKIKNAFAENQDAVLLTTLDVRRFVRKIIERDLFVL PVLSWQELGDEMNLKVAGTIELIGDELDETA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| YPO0266 | YP_002345347.1 | secretion system apparatus protein SsaV | Virulence | Not named | Protein | 0.0 | 100 |
| ssaV | NP_456114.1 | putative type III secretion protein | Virulence | SPI-2 | Protein | 1e-159 | 58 |
| ssaV | NP_805085.1 | secretion system apparatus protein SsaV | Virulence | SPI-2 | Protein | 1e-159 | 58 |
| ssaV | CAA70536.1 | secretion system apparatus | Virulence | SPI-2 | Protein | 6e-160 | 58 |
| ssaV | YP_216422.1 | secretion system apparatus protein SsaV | Virulence | SPI-2 | Protein | 9e-160 | 58 |
| ssaV | NP_460379.1 | secretion system apparatus protein SsaV | Virulence | SPI-2 | Protein | 8e-160 | 58 |
| escV | YP_003236089.1 | putative translocator EscV | Virulence | LEE | Protein | 3e-126 | 49 |
| escV | CAI43875.1 | EscV protein | Virulence | LEE | Protein | 6e-127 | 49 |
| escV | YP_003223476.1 | translocator EscV | Virulence | LEE | Protein | 8e-127 | 49 |
| escV | CAC81861.1 | EscV protein | Virulence | LEE II | Protein | 6e-127 | 49 |
| escV | YP_003232152.1 | T3SS structure protein EscV | Virulence | LEE | Protein | 5e-127 | 49 |
| escV | AAK26714.1 | EscV | Virulence | LEE | Protein | 4e-127 | 49 |
| escV | AAL57541.1 | EscV | Virulence | LEE | Protein | 4e-127 | 49 |
| unnamed | AAL06368.1 | EscV | Virulence | LEE | Protein | 1e-123 | 49 |
| escV | AAC38382.1 | EscV | Virulence | LEE | Protein | 5e-126 | 49 |
| escV | AAC31514.1 | L0035 | Virulence | LEE | Protein | 1e-125 | 49 |
| escV | NP_290269.1 | hypothetical protein | Virulence | LEE | Protein | 2e-125 | 49 |
| escV | ACU09459.1 | EscV protein | Virulence | LEE | Protein | 1e-125 | 49 |
| ECs4569 | NP_312596.1 | hypothetical protein | Virulence | LEE | Protein | 2e-125 | 49 |
| escV | AFO66414.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 4e-121 | 49 |
| escV | AFO66296.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 3e-121 | 49 |
| lssD | AAO18050.1 | LssD | Virulence | TTSS locus | Protein | 8e-124 | 46 |
| invA | AAS66860.1 | InvA | Not tested | SSR-2 | Protein | 7e-88 | 42 |
| hrcV | AAT96139.1 | HrcV | Virulence | T-PAI | Protein | 6e-91 | 42 |
| hrcV | AAT96193.1 | HrcV | Virulence | T-PAI | Protein | 6e-91 | 42 |
| hrcV | ABA47273.1 | HrcV | Virulence | S-PAI | Protein | 2e-89 | 41 |
| ysaV | AAS66840.1 | YsaV | Not tested | SSR-1 | Protein | 1e-95 | 41 |
| hrcV | NP_791229.1 | type III secretion protein HrcV | Virulence | Hrp PAI | Protein | 2e-87 | 41 |
| hrcV | AAT96337.1 | HrcV | Virulence | S-PAI | Protein | 2e-87 | 41 |
| hrcV | AAT96297.1 | HrcV | Virulence | S-PAI | Protein | 4e-88 | 41 |
| hrcV | AAT96256.1 | HrcV | Virulence | S-PAI | Protein | 2e-88 | 41 |
| hrcV | AAR25631.1 | type III secretion protein HrcV | Not tested | Not named | Protein | 8e-84 | 41 |
| hrcV | AAB05999.2 | HrcV | Virulence | Hrp PAI | Protein | 4e-93 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| YPDSF_3705 | YP_001165028.1 | secretion system apparatus protein SsaV | VFG0514 | Protein | 3e-160 | 58 |
| YPDSF_3705 | YP_001165028.1 | secretion system apparatus protein SsaV | VFG0729 | Protein | 3e-126 | 49 |
| YPDSF_3705 | YP_001165028.1 | secretion system apparatus protein SsaV | VFG0813 | Protein | 7e-126 | 49 |
| YPDSF_3705 | YP_001165028.1 | secretion system apparatus protein SsaV | VFG0064 | Protein | 2e-126 | 48 |
| YPDSF_3705 | YP_001165028.1 | secretion system apparatus protein SsaV | VFG0198 | Protein | 6e-107 | 45 |
| YPDSF_3705 | YP_001165028.1 | secretion system apparatus protein SsaV | VFG0384 | Protein | 5e-120 | 45 |
| YPDSF_3705 | YP_001165028.1 | secretion system apparatus protein SsaV | VFG2126 | Protein | 3e-96 | 42 |
