Gene Information

Name : YPDSF_3248 (YPDSF_3248)
Accession : YP_001164578.1
Strain : Yersinia pestis Pestoides F
Genome accession: NC_009381
Putative virulence/resistance : Unknown
Product : integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 3701106 - 3702365 bp
Length : 1260 bp
Strand : -
Note : -

DNA sequence : 
ATGGCTCTGAGTGATGTGAAGGTTCGTACAGCCAAGCCTGAAGCAAAAGCCTATAAACTTACCGACGGCGAAGGCATGGT
GTTACTGGTTCACCCTAACGGCTCGAAATACTGGCGGCTACGCCATCGCTTTGACGGTAAAGAAAAGATGTTGGCGTTGG
GGAAGTACCCTGAAATATCACTGGCTGATGCCAGGGCACGGCGTGACGAAGCTCGTAAGCAGTTAGCTAATGGTGTGGAC
CCAAGTGAGAGCAAGAAAGCCGTTAAGGTAGAGCAGGAGCAAGAAGCGATAACTTTTGAAGTGGTAGCCAGAGAGTGGCA
TGCCAGTAATCGTCAATGGTCAGAAGCTCACAGTGCTCGAGTACTCAAAAGCTTAGAGGACAATCTCTTTCAAGCCATTG
GCAAACGGAATATCGCAGACCTCGGAACCCGTGATCTTTTACCTCCAATTAAAGCCGTAGAGATGGCTGGACGTCTTCAG
GTGGCTTCCCGCCTGCAACAACGAACCACAGCAATAATGCGCTATGCAGTTCAAAGCGGTTTAATTGATTACAACCCCGC
GCAGGAGATGGCGGGCGCTGTTGCTACCGGTAAAAGAAAGCACCGCGCTGCACTCGAGTTAAACCGTGTTTCAGAGTTAC
TTCATCGCATCGACTACTACAGTGGCAGGCCACTCACTCGACTAGCGGTAGAATTGACTTTATTGGTCTTTATCCGTTCC
AGTGAATTACGCTTCGCCCGTTGGTCAGAAGTCGATTTTGAAACTGCAATGTGGACGATTCCGGGAGAACGTGAACCACT
GGAAGGTGTTAAGCATTCACATCGAGGTTCAAAAATGCGCACTCCCCATCTTATCCCCTTATCCCGTCAAGCTCTCGCCA
TTCTGGAAAAGATCAAAAGCATGAGTGGAAACCGTGAGCTGATCTTTATCGGTGATCACGACCCACGTAAACCGATGAGT
GAAAACACGGTAAACAAAGCCCTACGCGTGATGGGATATGACACGAAAGTTGAAGTCTGTGGCCACGGTTTCAGAACCAT
GGCTTGTAGTTCATTGATTGAGTCTGGATTGTGGTCGAGGGATGCAGTAGAACGGCAGATGAGTCATCAGGAGCGCAACT
CTGTGCGTGCGGCTTATATCCATAAAGCCGAGCACTTAGATGAGCGCAGATTGATGATTCAGTGGTGGGCTGATTACTTG
GATGCGAATCGGGAGAAGGGGGTTAGTCCGTTTGATTTTGCGAAGTTGAATACGAGCTGA

Protein sequence : 
MALSDVKVRTAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRHRFDGKEKMLALGKYPEISLADARARRDEARKQLANGVD
PSESKKAVKVEQEQEAITFEVVAREWHASNRQWSEAHSARVLKSLEDNLFQAIGKRNIADLGTRDLLPPIKAVEMAGRLQ
VASRLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFIRS
SELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLIPLSRQALAILEKIKSMSGNRELIFIGDHDPRKPMS
ENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSRDAVERQMSHQERNSVRAAYIHKAEHLDERRLMIQWWADYL
DANREKGVSPFDFAKLNTS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 2e-148 79
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 6e-144 70
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 6e-142 69
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 1e-143 69
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 9e-144 69
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 9e-144 69
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 9e-144 69
int AAK00456.1 Int Not tested SHI-1 Protein 3e-134 69
int AAL51003.1 CP4-like integrase Not tested LEE Protein 4e-142 69
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 3e-142 69
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 3e-142 69
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 3e-142 69
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 2e-142 69
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 8e-143 69
int AAL51028.1 CP4-like integrase Not tested LEE Protein 2e-142 69
int-phe AAL60261.1 Int-phe Not tested LEE Protein 2e-142 69
int AAK16198.1 Int Not tested PAI-I AL862 Protein 2e-142 69
int CAC81896.1 integrase Not tested LEE II Protein 1e-132 69
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 4e-141 69
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 2e-142 69
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 1e-141 69
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 6e-142 69
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 6e-125 62
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 6e-125 62
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 6e-114 58
APECO1_1051 YP_853069.1 phage integrase Not tested PAI IV APEC-O1 Protein 7e-82 57
int CAA08754.1 integrase Not tested HPI Protein 3e-107 56
intB AAD37509.1 P4-like integrase Not tested PAI IV 536 Protein 2e-93 56
int2 NP_993013.1 integrase Not tested HPI Protein 1e-106 55
int CAA21384.1 - Not tested HPI Protein 1e-106 55
int CAB59974.1 integrase Not tested HPI Protein 4e-108 55
int YP_002346908.1 integrase Not tested HPI Protein 1e-106 55
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 1e-106 55
unnamed AAD17660.1 unknown Not tested HPI Protein 5e-104 54
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 1e-107 54
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 1e-107 54
unnamed ABR13507.1 phage integrase Not tested PAGI-6 Protein 2e-103 53
int AAC31482.1 CP4-like integrase Not tested LEE Protein 7e-78 43
int ACU09430.1 integrase Not tested LEE Protein 7e-78 43
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 1e-77 43
ECs4534 NP_312561.1 integrase Not tested LEE Protein 1e-77 43
int AAD44730.1 Int Not tested SHI-2 Protein 2e-78 43
int CAC39282.1 integrase Not tested LPA Protein 3e-79 43
aec33 AAW51716.1 Int Not tested AGI-3 Protein 2e-79 43
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 1e-68 42
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 3e-77 42
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 4e-77 42
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 4e-77 42
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 3e-68 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPDSF_3248 YP_001164578.1 integrase VFG1536 Protein 1e-148 79
YPDSF_3248 YP_001164578.1 integrase VFG0626 Protein 4e-144 69
YPDSF_3248 YP_001164578.1 integrase VFG1693 Protein 3e-143 69
YPDSF_3248 YP_001164578.1 integrase VFG0783 Protein 4e-78 43
YPDSF_3248 YP_001164578.1 integrase VFG0598 Protein 2e-77 42