Gene Information

Name : fliP (YPDSF_1304)
Accession : YP_001162668.1
Strain : Yersinia pestis Pestoides F
Genome accession: NC_009381
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 1468578 - 1469402 bp
Length : 825 bp
Strand : +
Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus

DNA sequence :
ATGACGTCCCATCGCCCTGTTTTTATTAGCAAACGTTCTCTCATCACTGGCGCGCTGTTCTGCCGGATGTGGCGCACCAT
AATAATGTCGGTTATCAATAAAACCACACTGGGGCTGCTCACCTTATTTTGCTCGCCTTCGGTATTGGCTCAACTGCCTG
GGATCATCAGCCAACCGTTGGCTAATGGTGGACAGAGTTGGTCTTTACCCGTGCAAACGCTGGTGTTCATCACCACGCTG
AGTTTTTTGCCCGCGGCGTTACTGATGATGACCAGTTTTACCCGCATCATTATTGTGCTCGGGTTACTGCGTAACGCGAT
GGGCACCCCTTCGGCCCCGCCGAATCAGGTGATGCTGGGGCTGGCACTGTTTCTGACCTTTTTTATTATGTCACCGGTGT
TTGACAAAGTGTATCAAGAGGCTTATCTGCCCTTCAGTCAGGATAAAATCAGCATGGACGTGGCGTTGGATAAAGGCTCA
CAACCGTTGCGGGAGTTTATGCTGCGCCAAACGCGGGAATCTGATCTGGCGCTGTATGCCCGGTTGGCAAACCTGCCGCC
GCTGGAAGGCCCCGAAATGGTTCCGATGCGTATTCTGCTGCCCGCCTATGTCACCAGTGAGTTGAAAACGGCATTCCAAA
TTGGTTTTACCGTATTTATTCCGTTCCTGATTATCGATTTGGTGGTCGCCAGTGTGCTGATGGCGCTGGGGATGATGATG
GTTCCGCCTGCCAGTATCTCGCTACCGTTCAAGCTGATGCTATTTGTTCTGGTTGATGGCTGGCAATTGTTACTGGGTTC
ACTGGCACAGAGTTTTTATAGCTGA

Protein sequence :
MTSHRPVFISKRSLITGALFCRMWRTIIMSVINKTTLGLLTLFCSPSVLAQLPGIISQPLANGGQSWSLPVQTLVFITTL
SFLPAALLMMTSFTRIIIVLGLLRNAMGTPSAPPNQVMLGLALFLTFFIMSPVFDKVYQEAYLPFSQDKISMDVALDKGS
QPLREFMLRQTRESDLALYARLANLPPLEGPEMVPMRILLPAYVTSELKTAFQIGFTVFIPFLIIDLVVASVLMALGMMM
VPPASISLPFKLMLFVLVDGWQLLLGSLAQSFYS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 1e-27 44
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 4e-31 41
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 5e-32 41
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 5e-20 41
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 5e-20 41
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 2e-32 41
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 2e-32 41
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 6e-21 41
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 6e-21 41
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 1e-27 41
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 1e-27 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_001162668.1 flagellar biosynthesis protein FliP VFG2338 Protein 3e-100 97
fliP YP_001162668.1 flagellar biosynthesis protein FliP VFG2494 Protein 5e-73 68
fliP YP_001162668.1 flagellar biosynthesis protein FliP VFG1259 Protein 8e-61 57
fliP YP_001162668.1 flagellar biosynthesis protein FliP VFG2016 Protein 2e-60 56
fliP YP_001162668.1 flagellar biosynthesis protein FliP VFG0188 Protein 3e-30 43