|
Name : Strop_4275 (Strop_4275) Accession : YP_001161081.1 Strain : Salinispora tropica CNB-440 Genome accession: NC_009380 Putative virulence/resistance : Virulence Product : ATPase Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 4842348 - 4844882 bp Length : 2535 bp Strand : - Note : PFAM: UvrB/UvrC protein; AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase DNA sequence : ATGTTCGAGCGGTTCACCGACCGAGCGCGTCGGGTTGTCGTCCTGGCCCAGGAAGAGGCCCGGATGCTCAACCACAATTA CATTGGTACTGAGCACATTCTGCTGGGCCTGATCCACGAGGGTGAGGGCGTGGCCGCCAAGGCGCTGGAGAGTCTGGGGA TCTCTCTGGAGGGCGTGCGACAGCAGGTTGAGGAGATCATCGGGCAGGGCCAGCAGGCGCCGAGTGGTCACATTCCGTTC ACCCCGCGGGCCAAGAAGGTGCTGGAGCTGTCACTGCGGGAGGCGCTGCAGCTTGGGCACAACTACATCGGTACCGAGCA CATTCTGCTGGGCCTGATCCGTGAGGGTGAGGGCGTGGCGGCTCAGGTGCTGGTGAAGTTGGGGGCGGACCTCAATCGGG TCCGTCAGCAGGTGATCCAGCTGCTGTCGGGCTATCAGGGCAAAGAGCCGGCGGCGGCGGGGACAGCGCCAGGCGAGGCC GCTCCGTCGACGAGCTTGGTGTTGGACCAGTTCGGTCGCAATCTCACGCAGGCGGCTCGTGAGGGCAAGCTTGATCCGGT TATCGGTCGGGAAAAAGAGATCGAGCGGGTCATGCAGGTGCTGTCCCGGCGGACGAAGAACAACCCGGTGCTGATCGGTG AGCCGGGTGTGGGCAAGACCGCCGTGGTGGAGGGCCTGTCGCAGCGGATCGTCAAGGGCGAGGTGCCCGAGACGCTGAAG GACAAGCAGCTGTACACCCTTGACCTGGGTGCTTTGGTAGCGGGTTCACGGTATCGGGGTGACTTCGAGGAGCGGTTGAA GAAGGTCCTCAAGGAGATCCGTACCCGTGGTGACATCATCCTGTTCATTGATGAGATCCACACGTTGGTGGGCGCGGGTG CCGCCGAGGGTGCGATCGACGCGGCGAGCATTCTGAAGCCGATGCTGGCGCGGGGTGAGTTGCAGACCATCGGCGCGACG ACGCTGGATGAGTACCGCAAGCACCTGGAGAAGGACGCCGCGTTGGAACGCCGGTTCCAGCCCATCCAGGTGGGTGAGCC GTCGTTGCCGCACACCATTGAGATCCTGAAGGGTCTGCGGGACCGCTACGAGGCGCACCACCGTGTGTCGATCACGGATG CGGCCCTGGTGGCGGCGGCAACCCTCGCTGACCGCTACATCTCGGATCGATTCCTGCCGGACAAGGCCATCGACTTGATC GATGAGGCGGGCGCGCGGATGCGGATCCGGCGGATGACCGCGCCGCCAGACCTGCGGGACTTCGATGAGCGGATCGCGCA GGTGCGTCGGGACAAGGAGTCCGCGATCGACGCGCAGGACTTCGAACGAGCCGCGCAGCTGCGGGACACCGAGAAGCAGC TGCTGGGCCAGAAGGCGCAGCGGGAGAAGGAGTGGAAGGCCGGTGATCTGGATGTCGTCACCGAGGTCGACGACGAGCAG ATCGCCGAGGTGCTCGGTAACTGGACGGGCATCCCGGTCTACAAGCTGACCGAGGAGGAGACCTCCCGGCTGCTGCGGAT GGAAGACGAGCTGCACAAGCGGGTCATTGGCCAGGAAGACGCGGTCAAGGCGGTGTCGAAGGCGATCCGCCGCACGCGGG CCGGCCTGAAGGACCCGAAGCGGCCGTCTGGGTCGTTCATCTTCGCGGGTCCGTCCGGGGTCGGTAAGACCGAGTTGTCC AAGGCCCTCGCGGAGTTCCTCTTCGGCAGCGAAGACGCGTTGATCCAGCTGGACATGTCCGAGTTCCACGACCGGTACAC GGTGTCCCGGCTCGTCGGTGCGCCTCCCGGCTACGTCGGCTACGACGAGGGCGGGCAGCTGACCGAGAAGGTCCGCCGGC GGCCGTTCAGCGTGGTCCTCTTCGACGAAATCGAGAAGGCCCACCCGGACGTGTTCAACACGCTGCTGCAGATCCTCGAG GACGGGCGGCTCACCGACGGTCAGGGCCGGATCGTGGACTTCAAGAACACGGTCATCATCCTGACAACCAACCTCGGTAC CCGCGACGTCGCCAAGGCGGTCTCGCTGGGCTTCCAGGCCTCTGATGACTCCGACTCGAACTACGACCGGATGAAGCAGA AGGTCAACGACGAGCTCAAGCAGCACTTCCGGCCGGAGTTCCTCAACCGGATCGACGACACCATCGTCTTCCACCAGCTG CGCCACCGGGAGATCCTCTCGATCGTCGATATCATGATCGGTCGGATCGAGACCCAGCTGCGCAACAAGGACATGGGCCT GGAGCTCACCGACAACGCCAAGCAGTACCTCGCGACGAAGGGCTTCGACCCCGTCCTCGGTGCCCGGCCGCTACGCCGCA CGATCCAGCGGGACATCGAGGACAACCTCTCCGAGCGGATCCTGTTCAACGAGCTCAACCCCGGCCAGATCGTCATCGTC GACTGCGACGGTGATCCGACCAATATCGATTCGTCCACCCTCACCTTCCGCGGCACCGACAAACCGGCAGACCTGCCGGA CGCGGTCCCAGCCGACCTCGGCGGCGCTGCCACGGGGGCGGACGACACGGCGTAG Protein sequence : MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEGVRQQVEEIIGQGQQAPSGHIPF TPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYQGKEPAAAGTAPGEA APSTSLVLDQFGRNLTQAAREGKLDPVIGREKEIERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLSQRIVKGEVPETLK DKQLYTLDLGALVAGSRYRGDFEERLKKVLKEIRTRGDIILFIDEIHTLVGAGAAEGAIDAASILKPMLARGELQTIGAT TLDEYRKHLEKDAALERRFQPIQVGEPSLPHTIEILKGLRDRYEAHHRVSITDAALVAAATLADRYISDRFLPDKAIDLI DEAGARMRIRRMTAPPDLRDFDERIAQVRRDKESAIDAQDFERAAQLRDTEKQLLGQKAQREKEWKAGDLDVVTEVDDEQ IAEVLGNWTGIPVYKLTEEETSRLLRMEDELHKRVIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKTELS KALAEFLFGSEDALIQLDMSEFHDRYTVSRLVGAPPGYVGYDEGGQLTEKVRRRPFSVVLFDEIEKAHPDVFNTLLQILE DGRLTDGQGRIVDFKNTVIILTTNLGTRDVAKAVSLGFQASDDSDSNYDRMKQKVNDELKQHFRPEFLNRIDDTIVFHQL RHREILSIVDIMIGRIETQLRNKDMGLELTDNAKQYLATKGFDPVLGARPLRRTIQRDIEDNLSERILFNELNPGQIVIV DCDGDPTNIDSSTLTFRGTDKPADLPDAVPADLGGAATGADDTA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 76 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Strop_4275 | YP_001161081.1 | ATPase | VFG0079 | Protein | 0.0 | 60 |
| Strop_4275 | YP_001161081.1 | ATPase | VFG0080 | Protein | 4e-147 | 51 |
