Gene Information

Name : Strop_4185 (Strop_4185)
Accession : YP_001160991.1
Strain : Salinispora tropica CNB-440
Genome accession: NC_009380
Putative virulence/resistance : Resistance
Product : ABC transporter-like protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 4751084 - 4751860 bp
Length : 777 bp
Strand : +
Note : PFAM: ABC transporter related; SMART: AAA ATPase

DNA sequence : 
GTGTCCGTCGCACCCACGACCACCGGCGTCACGGTCACCGCCCAAGCGCTGCGTAAGGAGTACGGCTCCGGCCAGTCCCG
GGTCGTCGCCCTCGACAGCGTCGACCTCGACCTCGCCGCAGGCCGGTTCACCGCCATCATGGGCCCCTCCGGCTCCGGCA
AGTCCACCCTGCTGCACTGCCTCGCCGGCCTCGACCGGCCCACCTCCGGCACCGTGCGGATCGGCGACGCCGACCTCGCC
CGGCTCGATGACCGCCGGCTGACCCTGCTCCGGCGGGACCGGATCGGCTTCGTCTTCCAGAAGTTCAACCTGCTGCCCAC
CCTCACCGCCGAGGAGAACATCGTGCTGCCGCAGGCGATCGCCGGCCGGCGGCCCGATCCGGACTGGCTACAGCAGGTGG
TGACCGCGGTCGGCCTGACCGACCGCCTCGGGCACCGCCCCGCCGAGCTGTCCGGGGGCCAGCAGCAGCGGGTCGCCGTG
GCCCGGGCACTGGTCACCCGCCCTTGGGTGATCTTCGCCGACGAGCCCACCGGCAACCTCGACTCCCGCTCCGGCGCGGA
GGTGCTGCGGCTGCTCCGCAACGCGGTCGACACCCTCGGCCAGACCGTGGTCATGGTGACCCACGACCCGGTGGCCGCCG
CACACGCCGACCGGGTGGTCTTCCTCGCCGACGGCCGGCTGGCCGACGAACTGCGTACGCCGACCGCCGCGCGGGTCCTC
GACGCGCTCACCCGCCTCGACCCGGCCGGCGCCGGCGCGCCGTCCGTGCAGCGGTGA

Protein sequence : 
MSVAPTTTGVTVTAQALRKEYGSGQSRVVALDSVDLDLAAGRFTAIMGPSGSGKSTLLHCLAGLDRPTSGTVRIGDADLA
RLDDRRLTLLRRDRIGFVFQKFNLLPTLTAEENIVLPQAIAGRRPDPDWLQQVVTAVGLTDRLGHRPAELSGGQQQRVAV
ARALVTRPWVIFADEPTGNLDSRSGAEVLRLLRNAVDTLGQTVVMVTHDPVAAAHADRVVFLADGRLADELRTPTAARVL
DALTRLDPAGAGAPSVQR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-41 46
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 3e-41 46
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-41 46
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 9e-38 44
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 2e-23 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Strop_4185 YP_001160991.1 ABC transporter-like protein CP001581.1.gene798.p Protein 1e-40 49
Strop_4185 YP_001160991.1 ABC transporter-like protein CP001581.1.gene598.p Protein 1e-41 48
Strop_4185 YP_001160991.1 ABC transporter-like protein NC_008702.1.4606598. Protein 2e-34 48
Strop_4185 YP_001160991.1 ABC transporter-like protein NC_012469.1.7686878. Protein 4e-35 44
Strop_4185 YP_001160991.1 ABC transporter-like protein NC_012469.1.7685735. Protein 3e-31 42