Gene Information

Name : Strop_2972 (Strop_2972)
Accession : YP_001159788.1
Strain : Salinispora tropica CNB-440
Genome accession: NC_009380
Putative virulence/resistance : Resistance
Product : D-isomer specific 2-hydroxyacid dehydrogenase
Function : -
COG functional category : C : Energy production and conversion
COG ID : COG1052
EC number : -
Position : 3401861 - 3402862 bp
Length : 1002 bp
Strand : +
Note : PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding

DNA sequence : 
ATGCGCGTATCGGTGTTTAGCACAAAGCCATACGACCGGGAGTTCTTGTCGGCGGCCAACTCCATGGACGGTCACGAACT
GGAATTCCTCGAGCCCCGGCTGACCCCGCAGACCGCCAAGCTCGCCAGCGGCGCGGCGGCGGTCTGCGCGTTCGTCAACG
ACGACCTCGGGACCGAGGTACTGGAGCGACTGGCCGCGGATGGCGTCCGCTTGATCGCACTTCGCTCCGCCGGTTTCAAC
CACGTCGACCTGGCCACCGCCCGCCGGCTCGGCCTCACCGTCGTCCGGGTGCCGGAGTACTCACCGTACGCCGTGGCCGA
GCACACGGTCGCCCTGATGCTCGCCCTCAACCGCAAGGTCTACCGGGCCTACAACCGGGTTCGGGAGCACAACTTCGCGC
TCACCGGGCTGCTCGGCTTCGACCTGCACGGCCGGACCGTCGGCGTCGTCGGCACCGGGAAGATCGGGTTCTGTGTGGCC
CGCATCCTGTCTGGGTTCGGCTGCCGGGTCATCGCCAGTGACCCCTACCCGGACGACGCGGTGACCGCGGCCGGGATTGA
GTACGTGCCGCTGCAGCGCCTACTGAGCGAGTCGGACGTGATCACCCTGCACTGCCCGCTGACCCCGGACACCGAGCACC
TGATCAACCCCGACCGGATCGCCCAGATGCGCAGGGGCGTCATGCTGATCAATACCAGCCGCGGGGCGCTGGTGGACACG
CGAGCGGTGATCGACGGGCTCAAGAACGGCCAGATCGGCTATCTCGGTCTGGACGTGTACGAGGAGGAGACCGACCTGTT
CTTCGAGGACCTCTCCGACCGAGTCCTCGATGACGACGACTTCTCCCGGCTCAACACGTTCCCCAATGTGCTGATCACCG
GTCACCAGGCATTCTTTACCGAAGAAGCGATGCGCAACATCGCCGCCACCACGATCGACAGCCTGACCACCATCGAGCGG
GAGGGGCCAAACGCCGTCCCCCAGTCGGCCCGGGTTTGCTGA

Protein sequence : 
MRVSVFSTKPYDREFLSAANSMDGHELEFLEPRLTPQTAKLASGAAAVCAFVNDDLGTEVLERLAADGVRLIALRSAGFN
HVDLATARRLGLTVVRVPEYSPYAVAEHTVALMLALNRKVYRAYNRVREHNFALTGLLGFDLHGRTVGVVGTGKIGFCVA
RILSGFGCRVIASDPYPDDAVTAAGIEYVPLQRLLSESDVITLHCPLTPDTEHLINPDRIAQMRRGVMLINTSRGALVDT
RAVIDGLKNGQIGYLGLDVYEEETDLFFEDLSDRVLDDDDFSRLNTFPNVLITGHQAFFTEEAMRNIAATTIDSLTTIER
EGPNAVPQSARVC

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EF2295 NP_815952.1 D-specific alpha-keto acid dehydrogenase Not tested Not named Protein 3e-37 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Strop_2972 YP_001159788.1 D-isomer specific 2-hydroxyacid dehydrogenase U35369.1.gene5.p01 Protein 1e-37 41
Strop_2972 YP_001159788.1 D-isomer specific 2-hydroxyacid dehydrogenase NC_014475.1.orf2.gen Protein 2e-37 41
Strop_2972 YP_001159788.1 D-isomer specific 2-hydroxyacid dehydrogenase NC_005054.2598279.p0 Protein 2e-37 41