Gene Information

Name : Strop_2555 (Strop_2555)
Accession : YP_001159377.1
Strain : Salinispora tropica CNB-440
Genome accession: NC_009380
Putative virulence/resistance : Virulence
Product : ABC transporter-like protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 2875535 - 2876344 bp
Length : 810 bp
Strand : +
Note : PFAM: ABC transporter related; SMART: AAA ATPase

DNA sequence : 
ATGCGGTCCCGGCTACGCGGTAGCGCGATGACCCTGGCGTACGAACGGCGGACCATCTCCCGCGAGCTGACCGTTGACGT
TCCGGACCAGTCGTTCACCGTCGTCATTGGCCCGAACGCGTGCGGCAAGTCCACCCTGCTGCGCGCCCTGTCCCGACTAC
TGCGGCCGACCACCGGTGCGGTCCTGCTGGACGGTGCCGACATCCACCAGCGTCCCGCCCGGGAGATCGCGAAGACCCTT
GGCCTGCTGCCCCAGTCGTCGGTCGCCCCGGACGGCATCGGGGTGGCCGAACTCGTTTCCCGGGGTCGATACCCACACCA
GGGGCTGCTGCGGCAGTGGTCCCGCGAGGACGAGGCGGTGGTCGCCGAGTCGATGGCGGCCACCGGTGTCGCCGACCTCG
CCGACCGCCCGGTAGCCGAACTCTCCGGTGGGCAACGACAACGGGTCTGGCTCGCCATGGCCCTCGCCCAGCAGACCCCC
CTGCTGCTGCTCGACGAACCCACCACGTATCTGGACATCGCCCACCAGATCGAGATCCTCGACCTCTGCGCCCGGCTACA
CGAGGAGGAGGGCCGCACGCTGGTCGCCGTACTCCACGACCTGAACCAGGCCGCCCGCTACGCGACCCACCTGATCGCGA
TGCGCGACGGGCAGGTGGTGGCCACCGGCCCACCCCAGACGGTGGTTACCGCCGCGCTCGTCGAGGAGGTCTTCGGCCTG
CCCTGCCGGGTCATCGACGACCCGGAGACCGGCACCCCGCTGGTGGTGCCGGCCTCCCGGCGCCGAACCCCGATCGGAGT
CACGGCGTGA

Protein sequence : 
MRSRLRGSAMTLAYERRTISRELTVDVPDQSFTVVIGPNACGKSTLLRALSRLLRPTTGAVLLDGADIHQRPAREIAKTL
GLLPQSSVAPDGIGVAELVSRGRYPHQGLLRQWSREDEAVVAESMAATGVADLADRPVAELSGGQRQRVWLAMALAQQTP
LLLLDEPTTYLDIAHQIEILDLCARLHEEEGRTLVAVLHDLNQAARYATHLIAMRDGQVVATGPPQTVVTAALVEEVFGL
PCRVIDDPETGTPLVVPASRRRTPIGVTA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 6e-64 52
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 6e-64 52
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 6e-64 52
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 6e-64 52
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 3e-60 51
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 5e-47 47
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 4e-50 46
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 3e-56 44
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 3e-56 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Strop_2555 YP_001159377.1 ABC transporter-like protein BAC0164 Protein 3e-47 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Strop_2555 YP_001159377.1 ABC transporter-like protein VFG0925 Protein 7e-73 58
Strop_2555 YP_001159377.1 ABC transporter-like protein VFG1042 Protein 3e-47 47