Gene Information

Name : Strop_1628 (Strop_1628)
Accession : YP_001158471.1
Strain : Salinispora tropica CNB-440
Genome accession: NC_009380
Putative virulence/resistance : Virulence
Product : ABC transporter-like protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 1851833 - 1852639 bp
Length : 807 bp
Strand : -
Note : PFAM: ABC transporter related; SMART: AAA ATPase

DNA sequence : 
ATGACCTCCCCACCCGCTCTCGAGGCAGCCCGCCTGACGCTCGCGTACGAGTCACGTCAGGTCGCTCACGATCTTGACGT
CTCCATCCCGGACGGCGCGGTAACCGTGATCCTCGGCCCGAACGCGTGCGGCAAGTCGACGCTGCTACGGGCGCTCGCGC
GACTGCTCCGCCCCAGGACCGGCCAGGTACTGCTCCACGGCCAGGACGTACAGCGGCTGGCCCCGAAGGAACTGGCCCGC
CGACTCGGGCTGCTACCGCAGTCCTCCGTGGCGCCGGCCGGCATCACCGTCGCCGACCTCGTCGGCCGTGGCCGCTTCCC
GCACCAACGAATGTTGCAGCAGTGGAGCCACGAGGACGAAGCGGCGGTGGCCCGGGCGCTCGCGGCGACCGGGGTGGCGG
AGCTGGCGGACCGGACCGTCGAGGAGTTGTCCGGCGGCCAACGACAGCGGGTGTGGATCGCACTGATCCTCGCCCAGGAG
ACGCCGGTGCTACTCCTGGACGAACCCACCACCTACCTCGATATCTCACACCAGCTCGAGGTGCTCGAACTGTGCCGACG
GCTCAACCGCGACCAGGGGCGCACCGTGGTCCTGGTGCTGCACGACCTCAATCAGGCAGCACGCTACGCCGACCATCTCG
TGGTGCTGCACGACGGCGCGGTGGCGGCCACCGGCGCCCCGCACACGGTGCTCACCGAGCAGTTGCTGCACGACGTCTTC
CGGCTGAAGGCCCGCGTCGTCACCGACCCGGTGTTCGGCACACCGCTGGTCATCCCGATCGCCGCTCGGAACACCGCCGC
CGCGTGA

Protein sequence : 
MTSPPALEAARLTLAYESRQVAHDLDVSIPDGAVTVILGPNACGKSTLLRALARLLRPRTGQVLLHGQDVQRLAPKELAR
RLGLLPQSSVAPAGITVADLVGRGRFPHQRMLQQWSHEDEAAVARALAATGVAELADRTVEELSGGQRQRVWIALILAQE
TPVLLLDEPTTYLDISHQLEVLELCRRLNRDQGRTVVLVLHDLNQAARYADHLVVLHDGAVAATGAPHTVLTEQLLHDVF
RLKARVVTDPVFGTPLVIPIAARNTAAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 1e-55 52
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 2e-57 51
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 4e-57 51
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 4e-57 51
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-57 51
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 2e-45 49
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 3e-53 45
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 3e-53 45
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 3e-44 44
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 1e-44 41
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 1e-44 41
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 1e-44 41
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 1e-44 41
CDCE8392_1767 YP_005134301.1 iron complex transport system ATP-binding protein Virulence Not named Protein 6e-28 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Strop_1628 YP_001158471.1 ABC transporter-like protein BAC0164 Protein 1e-45 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Strop_1628 YP_001158471.1 ABC transporter-like protein VFG0925 Protein 8e-60 54
Strop_1628 YP_001158471.1 ABC transporter-like protein VFG1042 Protein 1e-45 49