Gene Information

Name : Strop_1342 (Strop_1342)
Accession : YP_001158187.1
Strain : Salinispora tropica CNB-440
Genome accession: NC_009380
Putative virulence/resistance : Resistance
Product : ABC transporter-like protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1508945 - 1509673 bp
Length : 729 bp
Strand : -
Note : PFAM: ABC transporter related; SMART: AAA ATPase

DNA sequence : 
GTGAACGGGGTCGAGACCATCAGTACGTCGGCGCGAGCCCCCGAAGACGGGTCAGCACCCCTGCTGCGGGCGCGGGGGCT
ACGGCTCGCGTTCGGGCTGACCGAAGCCCTGCGTGGCATCGACCTGGACTGCCACGCCGGAGAGATCATCGCGGTGACCG
GCCCCTCCGGGTCGGGTAAGTCCACCCTCCTGCACGTACTCGCCGGCGTCCTGGTCCCGGATGAGGGCACCGTCGACTAC
GACACTGTTCGCCTCAGCGAACTCGACGAGGCGGGCCGGTCTCGGCTACGCCTGGGCACGTTCGGGTTCGTCTTCCAATA
CGGTCAACTCCTGCCGGACCTGTCCGCGGTAGACAACGTGACGATCCCCCTCCTGCTGGCCGGCGTCCGGCGTCGCGAAG
CCCTACGCCGGTCGGACAGCTGGCTCGACCGGCTCGGCCTGGCTGAGTGCTCCCGAAAGCTGCCGGCACAGCTCTCCGGC
GGGCAGGCGCAGCGGGTCGCCGTCGCCCGAGCCCTGGCCGCCCAGCCGACCGTGCTCTTCGCCGACGAGCCGACCGGATC
GCTGGACTCACTCGCCGCCGAGACCGTCATGCTCGCCCTCACCGAAGCGGCGAGAGATGCCAACACCGCCGTCATACTCA
CCACCCACGACCCACGTACGGCCGCCTTCGCCGACTGGGAAGTCGTCGTCCGCGATGGACAGACCACGGTCGGGGGAGCG
GACGGATGA

Protein sequence : 
MNGVETISTSARAPEDGSAPLLRARGLRLAFGLTEALRGIDLDCHAGEIIAVTGPSGSGKSTLLHVLAGVLVPDEGTVDY
DTVRLSELDEAGRSRLRLGTFGFVFQYGQLLPDLSAVDNVTIPLLLAGVRRREALRRSDSWLDRLGLAECSRKLPAQLSG
GQAQRVAVARALAAQPTVLFADEPTGSLDSLAAETVMLALTEAARDANTAVILTTHDPRTAAFADWEVVVRDGQTTVGGA
DG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-23 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 3e-23 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-23 41
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 8e-22 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Strop_1342 YP_001158187.1 ABC transporter-like protein NC_008702.1.4606598. Protein 1e-19 43