Gene Information

Name : YPDSF_4001 (YPDSF_4001)
Accession : YP_001154628.1
Strain :
Genome accession: NC_009377
Putative virulence/resistance : Virulence
Product : cytotoxic effector protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 48563 - 49342 bp
Length : 780 bp
Strand : -
Note : TIGRFAM: Peptidase C58, yopT: (2.1e-55)

DNA sequence : 
ATGCTGGATAGAAAGTTGACCAGCGACGGCAAAGCTAACCAACGCAGCAGCTTTACCTTCAGTATGATTATGTATCGCAT
GATACATTTTGTACTCAGCACTCGTGTGCCCGCGGTGAGAGAGTCTGTTGCAAATTACGGAGGTAACATCAATTTCAAGT
TTGCTCAGACCAAAGGGGCTTTTCTTCATAAAATAATAAAACATTCAGACACTGCTAGCGGTGTCTGTGAGGCTTTATGT
GCACATTGGATCAGGAACCATGCACAAGGCCAAAGCTTATTTGACCAGCTCTATGTTGGCGGGCGTAAGGGGAAATTCCA
GATCGATACACTTTACTCAATTAAACAGTTGCAAATAGATGGTTGTAAAGCAGACGTTGATCAAGATGAGGTAACACTAG
ATTGGTTCAAGAAAAATGGCATATCAGAACGTATGATTGAACGGCATTGCTTACTGCGTCCAGTTGATGTTACTGGTACG
ACGGAATCAGAAGGGCTGGATCAATTATTAAACGCTATCCTTGATACTCATGGGATAGGTTACGGTTATAAAAAAATACA
TCTCTCAGGCCAAATGTCAGCCCACGCCATAGCGGCGTATGTCAACGAAAAGAGTGGTGTTACTTTCTTCGATCCCAATT
TCGGTGAATTCCACTTTTCTGATAAGGAAAAGTTCCGCAAATGGTTTACTAACTCATTCTGGGGTAATTCTATGTATCAT
TATCCTCTGGGGGTGGGGCAGCGTTTTAGAGTGTTAACATTTGACTCCAAGGAGGTTTAA

Protein sequence : 
MLDRKLTSDGKANQRSSFTFSMIMYRMIHFVLSTRVPAVRESVANYGGNINFKFAQTKGAFLHKIIKHSDTASGVCEALC
AHWIRNHAQGQSLFDQLYVGGRKGKFQIDTLYSIKQLQIDGCKADVDQDEVTLDWFKKNGISERMIERHCLLRPVDVTGT
TESEGLDQLLNAILDTHGIGYGYKKIHLSGQMSAHAIAAYVNEKSGVTFFDPNFGEFHFSDKEKFRKWFTNSFWGNSMYH
YPLGVGQRFRVLTFDSKEV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAO18078.1 putative type III secreted effector LopT Not tested TTSS locus Protein 2e-72 55

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPDSF_4001 YP_001154628.1 cytotoxic effector protein VFG0375 Protein 2e-123 99