Gene Information

Name : YPDSF_3981 (YPDSF_3981)
Accession : YP_001154610.1
Strain :
Genome accession: NC_009377
Putative virulence/resistance : Virulence
Product : type III secretion protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 34341 - 34709 bp
Length : 369 bp
Strand : +
Note : TIGRFAM: Type III secretion system YscX: (1.2e-90)

DNA sequence : 
GTGAGTCGCATAATAACTGCCCCCCATATTGGCATCGAAAAACTGTCGGCGATTAGCCTGGAAGAGCTATCCTGTGGCTT
GCCTGAACGTTATGCCTTGCCGCCTGATGGGCATCCAGTCGAACCACATTTAGAGCGCCTTTACCCTACAGCACAAAGCA
AGCGTAGCCTATGGGACTTTGCTTCTCCCGGCTATACATTTCATGGATTACATCGAGCTCAAGATTATCGGCGCGAACTG
GATACCTTGCAGTCACTGCTAACCACCAGTCAGTCCTCAGAGCTACAAGCTGCCGCGGCGCTGCTTAAATGCCAACAAGA
TGATGATCGGTTACTGCAAATAATCCTTAACCTGTTGCACAAAGTATGA

Protein sequence : 
MSRIITAPHIGIEKLSAISLEELSCGLPERYALPPDGHPVEPHLERLYPTAQSKRSLWDFASPGYTFHGLHRAQDYRREL
DTLQSLLTTSQSSELQAAAALLKCQQDDDRLLQIILNLLHKV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lssB AAO18048.1 LssB Virulence TTSS locus Protein 6e-18 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPDSF_3981 YP_001154610.1 type III secretion protein VFG0386 Protein 8e-39 100
YPDSF_3981 YP_001154610.1 type III secretion protein VFG0196 Protein 5e-14 50