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Name : YPDSF_3972 (YPDSF_3972) Accession : YP_001154601.1 Strain : Genome accession: NC_009377 Putative virulence/resistance : Virulence Product : type III secretion protein Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4794 EC number : - Position : 27663 - 27929 bp Length : 267 bp Strand : - Note : TIGRFAM: Type III secretion protein HrpO: (2.1e-47) DNA sequence : ATGAGTCAAGGTGACATAATTCACTTCACCAGTCAGGCATTATGGCTGGTGCTAGTCCTTTCAATGCCGCCGGTGTTAGT GGCTGCGGTGGTAGGAACTTTGGTATCTTTAGTACAAGCTTTAACGCAAATCCAAGAGCAAACTCTGGGCTTCGTTATCA AATTGATCGCTGTGGTGGTCACACTGTTTGCTACCGCCTCGTGGCTTGGTAATGAATTGCACAGTTTTGCAGAAATGACC ATGATGAAGATACAAGGCATAAGATGA Protein sequence : MSQGDIIHFTSQALWLVLVLSMPPVLVAAVVGTLVSLVQALTQIQEQTLGFVIKLIAVVVTLFATASWLGNELHSFAEMT MMKIQGIR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lscS | AAO18039.1 | LscS | Virulence | TTSS locus | Protein | 2e-19 | 79 |
| ssaS | NP_456108.1 | putative type III secretion protein | Virulence | SPI-2 | Protein | 4e-08 | 52 |
| ssaS | NP_805091.1 | type III secretion protein | Virulence | SPI-2 | Protein | 4e-08 | 52 |
| ssaS | YP_216428.1 | secretion system apparatus protein SsaS | Virulence | SPI-2 | Protein | 4e-08 | 52 |
| ssaS | NP_460385.1 | type III secretion system apparatus protein | Virulence | SPI-2 | Protein | 4e-08 | 52 |
| ssaS | CAA68200.1 | secretion system apparatus, SsaS | Virulence | SPI-2 | Protein | 3e-08 | 52 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| YPDSF_3972 | YP_001154601.1 | type III secretion protein | VFG0395 | Protein | 7e-25 | 100 |
| YPDSF_3972 | YP_001154601.1 | type III secretion protein | VFG0187 | Protein | 2e-11 | 75 |
| YPDSF_3972 | YP_001154601.1 | type III secretion protein | VFG0043 | Protein | 5e-08 | 56 |
| YPDSF_3972 | YP_001154601.1 | type III secretion protein | VFG0520 | Protein | 1e-08 | 52 |
