Gene Information

Name : YPDSF_3970 (YPDSF_3970)
Accession : YP_001154599.1
Strain :
Genome accession: NC_009377
Putative virulence/resistance : Virulence
Product : type III secretion protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4792
EC number : -
Position : 25817 - 26881 bp
Length : 1065 bp
Strand : -
Note : TIGRFAM: Type III secretion protein HrpY/HrcU: (1.1e-210)

DNA sequence : 
ATGAGCGGAGAAAAGACAGAGCAACCCACCCCGAAGAAAATCCGTGATGCGCGCAAAAAGGGACAGGTAGCGAAAAGTAA
TGAAGTGGTCTCTACTGCGCTTATCGTCGCGCTGAGTGCGATGTTAATGGGGCTTTCTGACTACTATTTCGAGCATTTTA
GTAAGCTGATGCTAATCCCCGCAGAGCAGAGCTATCTTCCTTTCTCGCAGGCGCTTAGCTATGTGGTTGACAATGTGTTG
CTCGAGTTTTTTTATCTCTGTTTTCCTTTGTTAACAGTGGCGGCATTAATGGCGATCGCATCTCATGTTGTGCAGTATGG
TTTTCTTATAAGTGGTGAAGCAATTAAACCGGATATTAAAAAAATCAATCCAATAGAGGGTGCCAAGCGTATCTTTTCCA
TCAAAAGTTTAGTGGAGTTTCTCAAATCCATTCTCAAGGTTGTTTTGCTCAGTATACTCATCTGGATAATCATTAAGGGA
AATCTAGTCACACTCTTGCAGTTGCCAACCTGTGGAATTGAATGTATTACCCCTTTATTGGGGCAAATACTCCGGCAGTT
GATGGTTATCTGTACTGTTGGCTTTGTGGTCATCTCCATAGCCGACTATGCCTTTGAATACTATCAATATATTAAGGAAC
TTAAAATGAGCAAGGATGAGATCAAACGCGAGTACAAAGAAATGGAGGGTAGCCCAGAAATCAAAAGCAAGCGTCGTCAG
TTTCATCAAGAGATCCAATCGAGGAACATGCGGGAAAATGTTAAACGCTCATCAGTGGTGGTAGCTAATCCGACCCATAT
TGCTATTGGTATTCTTTACAAGCGAGGGGAAACACCACTACCGTTGGTAACATTCAAATATACCGATGCCCAAGTTCAGA
CTGTGCGCAAAATAGCAGAAGAAGAAGGGGTGCCTATTTTACAACGTATCCCATTAGCCCGTGCTCTTTATTGGGATGCG
CTCGTCGATCACTATATTCCGGCTGAGCAAATAGAGGCCACAGCTGAAGTGCTACGATGGCTAGAAAGGCAAAATATCGA
GAAACAACATTCCGAAATGTTATAA

Protein sequence : 
MSGEKTEQPTPKKIRDARKKGQVAKSNEVVSTALIVALSAMLMGLSDYYFEHFSKLMLIPAEQSYLPFSQALSYVVDNVL
LEFFYLCFPLLTVAALMAIASHVVQYGFLISGEAIKPDIKKINPIEGAKRIFSIKSLVEFLKSILKVVLLSILIWIIIKG
NLVTLLQLPTCGIECITPLLGQILRQLMVICTVGFVVISIADYAFEYYQYIKELKMSKDEIKREYKEMEGSPEIKSKRRQ
FHQEIQSRNMRENVKRSSVVVANPTHIAIGILYKRGETPLPLVTFKYTDAQVQTVRKIAEEEGVPILQRIPLARALYWDA
LVDHYIPAEQIEATAEVLRWLERQNIEKQHSEML

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscU AAO18037.1 LscU Virulence TTSS locus Protein 1e-115 73

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPDSF_3970 YP_001154599.1 type III secretion protein VFG0397 Protein 2e-156 99
YPDSF_3970 YP_001154599.1 type III secretion protein VFG0185 Protein 7e-96 67