Gene Information

Name : YPDSF_3959 (YPDSF_3959)
Accession : YP_001154588.1
Strain :
Genome accession: NC_009377
Putative virulence/resistance : Virulence
Product : type III secretion protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 16985 - 17614 bp
Length : 630 bp
Strand : -
Note : -

DNA sequence : 
ATGATGGAAAATTATATTACCTCTTTTCAATTGCGCTTCTGCCCCGCGGCTTATTTGCACTTGGAACAGTTACCATCATT
ATGGCGTTCAATATTGCCCTACTTACCTCAGTGGCGCGATAGTGCTCATCTCAATGCTGCTTTATTGGATGAATTTTCTC
TTGATACCGACTATGAAGAGCCCCATGGGCTGGGGGCGCTGCCTTTGCAGCCTCAATCACAGCTCGAACTGTTACTTTGT
CGCCTTGGATTAGTTCTGCATGGGGAGGCGATTCGCCGTTGTGTACTGGCCTCCCCATTACAACAATTATTGACATTGGT
TAATCAAGAAACATTAAGGCAAATTATTGTACAGCATGAGCTGCTAATCGGGCCTTGGCCCACTCACTGGCAGCGCCCGC
TGCCGACAGAAATAGAGAGCCGTACCATGATCCAGTCGGGGCTGGCTTTTTGGTTAGCAGCAATGGAACCCCAACCTCAG
GCATGGTGTAAACGGCTCAGTTTACGCCTCCCATTAGCTACGCCGTCAGAACCTTGGTTAGTGGCCGAGTCACAACGCCC
ACTGGCCCAAACTTTATGTCACAAACTTGTCAAACAGGTTACGCCTACATGCAGCCATTTGTTCAAATAA

Protein sequence : 
MMENYITSFQLRFCPAAYLHLEQLPSLWRSILPYLPQWRDSAHLNAALLDEFSLDTDYEEPHGLGALPLQPQSQLELLLC
RLGLVLHGEAIRRCVLASPLQQLLTLVNQETLRQIIVQHELLIGPWPTHWQRPLPTEIESRTMIQSGLAFWLAAMEPQPQ
AWCKRLSLRLPLATPSEPWLVAESQRPLAQTLCHKLVKQVTPTCSHLFK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscK AAO18026.1 LscK Virulence TTSS locus Protein 7e-40 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YPDSF_3959 YP_001154588.1 type III secretion protein VFG0410 Protein 5e-83 100
YPDSF_3959 YP_001154588.1 type III secretion protein VFG0219 Protein 2e-23 41