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Name : fimC (ASA_3727) Accession : YP_001143436.1 Strain : Aeromonas salmonicida A449 Genome accession: NC_009348 Putative virulence/resistance : Virulence Product : type I pilus usher protein FimC Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 4017991 - 4020522 bp Length : 2532 bp Strand : + Note : - DNA sequence : ATGAGCGTTTCAACATCAAACTCTGTTAGAACACATTATCTAAAAATGGCTTTTATGCTATGCGTGCCTTGCCTATTGGC TGTGGCAGATAACGCGTTGGCAGAAACGGAGTTTAATATTGATGCGCTTGATCTGGACGAGCGAACCAAGATAGACCTTT CCCAGTTTGCAGATGAAGGTTATATCCTGCCGGGTGATTACTATCTTGAGATTGAGGTCAACAAGAACAAGCTGCCACTC CAGAAAATCCCTTTTTATGAAGTGGAAGACGGCAAGGGAAAGGGCGGCGTTGCCTGCTTGCCTCAGGATCTTGTCCCCAG GATGGCGCTGACGGATGAAGCCATCGCCAAGATTGACAGCTGGCATCAGGGTCAGTGTGCCAACCTCCTGGCGCTGGATG GGGTCATCATCTCCAATGATATTGGTAACGGCTTGCTGAGGATTGCCGTCCCCCAGGCCTGGCTGAAATACAGTGACCCC AACTGGATTCCGCCCGAGCAGTGGGACGTCGGCGTCACTGGTCTGATGCTGGATTACAACCTCAATGCCCAGGTCAATGA AGGGCGCGACTACTCCAACAGCAACCTCAGCAGTTACGGTACCCTGGGGGCGAACTACGGTCCCTGGCGCCTGCGTGGCG ATTACCAGGCCAGCGCTTATTGGGGGGATGACGAGCGGTCGTCAGCCGAGCTTAACCGTCTCTACGCATACCGGCCTCTG TCGACCATGGCCGCCAAGCTGACCGTGGGCGAACAACAGCTCAACTCCCAATTGATCGATGGTTTTCGTTATACAGGTGT CAATCTGGCCAATGATGAGCGCATGTTGCCGCCCAGCTTGCAAGGCTATGCCCCCGAGGTGAGCGGCATCGCCAAGACCA ACGCCAAAGTCACCATCTCCCAGTCTGGCCGCATCATTTATGAGACCAACGTGCCTGCCGGCCCATTTCGTATTCAGGGA TTGGACAGTTCTGTGCGTGGTCGCCTCGATGTGCGGGTGGAAGAGCAGGATGGTAGCGTCAGCTCTTTTCAGGTGGATAC GGCAACCGTGCCTTATCTGACCCGGCCAGGGTATGTTCGCTACAACATCTCGGTCGGCGCCCCATCAGAACTGGGTGACT CTGCTCACGATATCCATGGTCCTGGTTTTGTGACGGGGGACTTTTCATGGGGGGTGGCGAACTCCTGGTCTCTTTATGGT GGTAGTCTGGTTGCTGGCGAATATAACTCCATGGGCCTGGGGATTGGTCGCGACCTGTATGCATTCGGTGCTATTTCTGC TGACTTGACCCAATCCATTGCGAAATTACCAGGTTTATCTACCAAGATTGGCCAGTCATTTCGGTTGAACTATGCCAAGC AGTTCGATGAATACAACAGCGCCATCACCTTTGCGGGTTATCGTTTCTCGCAACATAACTTCATGACAATGTCGCAGTTC CTGAGTAACAAGGATCGACTGGAAAATAATAACGTTGCATCGAGTGATGATTACAATACCTGGGGTGATAAAGAGCTATA TACCATTACTGCCAACAAGACATTCTGGGCTGATGATGCCGCCAAGGCATTGACCATGTATATGGATTACACCCATAGAA CCTATTGGAATCACGATGCGGAAGATCGTTACGGCCTGTCCATCAACAAGAATGTGAATATTGGCAGTTTCAAGGATGTC TCTCTCTATTTGTCTGCTTACAAGACCAAGACAGAGAATTATGAGGATGACAAGAGTGTCATGCTGACGGTCAGCATGCC GATCGGGGACCGGAAGAGTGCGGGATACAGCGTGCAGTCTTCCAACGGCAAGGTCACCCACCTGGCAACCTATCAAGATT ACAGCCGGCCGGATGATACCTATCAGCTGGGGGCCGGGGTGCAGAGCAATGGTCATGCGGTCGCGCGAGGTTATTACAAC CACAACAGTGACATCGGCGCCGTCAGCCTCAATGCCTACAGCGTACAGAGCGAATACACCTCGGTCGGTGCCAGCATGCG GGGCGGTTTGACGGCGACCGAACATGGCGCCGCCTTGCATCAGGCGACCCGACGTGGAGGAACCCGCATGATGGTCGATA CCGGCAAGGTCGCCGATGTCTCTTTCAATAATGGGCGTGCGGTGACGAACCGGTTTGGCGTGGCCGTGATCAGCGACATG ACCGATTATCGCAAGAGCGATACCCGTATCGACGTGGACCAGCTGAGCGATGACATAGATGCCATGAATGCCATCAAGCA GGGAACCCTGACGGAAGGTGCGATTGGGTATAATGCCTTTGAAATTGCCCAGGGCTTCAAGTTGCTGGCCAGCGTCAGGC TGCCCAATGGTTCCTATCCGCCCTTCGGTGCGACCGTCGTCAATGACGCCGGACGGGTACTCTCCGTCGTGGATGAGGAT GGCCTAGTCTATCTGGCGGGAGTAAAACCGGATGAATCGTTTGAACTTTCCTGGGGTGGTGCCCGTCAGTGCAAGATAGC GGCACCGCACGAAGTAACCGATCTGTCGATGAAGACGCTCACTTGTAAGTAA Protein sequence : MSVSTSNSVRTHYLKMAFMLCVPCLLAVADNALAETEFNIDALDLDERTKIDLSQFADEGYILPGDYYLEIEVNKNKLPL QKIPFYEVEDGKGKGGVACLPQDLVPRMALTDEAIAKIDSWHQGQCANLLALDGVIISNDIGNGLLRIAVPQAWLKYSDP NWIPPEQWDVGVTGLMLDYNLNAQVNEGRDYSNSNLSSYGTLGANYGPWRLRGDYQASAYWGDDERSSAELNRLYAYRPL STMAAKLTVGEQQLNSQLIDGFRYTGVNLANDERMLPPSLQGYAPEVSGIAKTNAKVTISQSGRIIYETNVPAGPFRIQG LDSSVRGRLDVRVEEQDGSVSSFQVDTATVPYLTRPGYVRYNISVGAPSELGDSAHDIHGPGFVTGDFSWGVANSWSLYG GSLVAGEYNSMGLGIGRDLYAFGAISADLTQSIAKLPGLSTKIGQSFRLNYAKQFDEYNSAITFAGYRFSQHNFMTMSQF LSNKDRLENNNVASSDDYNTWGDKELYTITANKTFWADDAAKALTMYMDYTHRTYWNHDAEDRYGLSINKNVNIGSFKDV SLYLSAYKTKTENYEDDKSVMLTVSMPIGDRKSAGYSVQSSNGKVTHLATYQDYSRPDDTYQLGAGVQSNGHAVARGYYN HNSDIGAVSLNAYSVQSEYTSVGASMRGGLTATEHGAALHQATRRGGTRMMVDTGKVADVSFNNGRAVTNRFGVAVISDM TDYRKSDTRIDVDQLSDDIDAMNAIKQGTLTEGAIGYNAFEIAQGFKLLASVRLPNGSYPPFGATVVNDAGRVLSVVDED GLVYLAGVKPDESFELSWGGARQCKIAAPHEVTDLSMKTLTCK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| prfC | CAD42029.1 | PrfC protein | Virulence | PAI II 536 | Protein | 4e-162 | 44 |
| papC | NP_755465.1 | PapC protein | Virulence | PAI I CFT073 | Protein | 6e-162 | 44 |
| papC | YP_002414015.1 | Outer membrane usher protein PapC | Not tested | Not named | Protein | 5e-162 | 44 |
| papC_2 | NP_757034.1 | PapC protein | Virulence | PAI II CFT073 | Protein | 5e-162 | 44 |
| pixC | CAE85159.1 | PixC protein | Not tested | PAI V 536 | Protein | 4e-166 | 44 |
| papC | AAZ04424.1 | outer membrane usher protein | Virulence | PAI I APEC-O1 | Protein | 2e-160 | 43 |
| papC | YP_854254.1 | outer membrane usher protein PapC | Virulence | PAI I APEC-O1 | Protein | 3e-160 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| fimC | YP_001143436.1 | type I pilus usher protein FimC | VFG1548 | Protein | 2e-162 | 44 |
| fimC | YP_001143436.1 | type I pilus usher protein FimC | VFG0884 | Protein | 3e-162 | 44 |
| fimC | YP_001143436.1 | type I pilus usher protein FimC | VFG0895 | Protein | 2e-162 | 44 |
