Gene Information

Name : join (ASA_2548)
Accession : YP_001142325.1
Strain : Aeromonas salmonicida A449
Genome accession: NC_009348
Putative virulence/resistance : Unknown
Product : IS3 family transposase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 2723687 - 2724849 bp
Length : 1163 bp
Strand : +
Note : -

DNA sequence : 
ATGACAAGATTACGTTGCTCATTTACTGCCGAATTCAAACTCGAAGCCGCATCCTTGGTGCTCGACCAGGGGTATTCTGT
TCCCGAAGCAAGCCGTTCGCTGGATGTCGGTGAAACCGTACTTCGCCGCTGGGTTCAGCAGCTTCAATCCGAACGCTGTG
GCACTACCCCAATCAGCAAAGCGCTGACTCCGGAGCAGCAGAAAATCCAGGTGCTGGAAGCCCGTATCAACCGGCTCGAG
CGCGAAAAGGACATACTAAAAAAGGCTACTGCTCTCTTGATGGCGGACGAGTTCACACGTACGCGCTGATAGACCGATTA
AGGGAGCAAGCCCCCATCACCCTGGTCTGCTGCGCTTTCGATATTCCCACATCCTGTTTTTACGATTATCTGGCTCGCAG
GAGAGTGATTAACCGTGAGCGGATGAAACAACGAAGCGAGTTGCGCCGTTTGTTCAAAGAGAGCCGGGATTCCGCAGGCA
GCCGCGCCTTGATGTCGATGATGCGAGAGCTGGGGTATCAGATTGGCCGATTCAAAGTCCGTAACCTGATGAAGGAAGCT
GGGCTGGCGTCCAAACAGCCGGGCGCACACCGTTATAAGGTTGCATGCTCTGAACGACCGGATATTCCGAATCTGCTGGC
CCGCGAATTTGATGTTCCGCAACCCAATCAGGTGTGGTGTGGCGATATCACCTACGTCTGGACAAGTGCTCGTTGGCATT
ACTTAGCAGTGGTGCTTGACCTTCATACCCGGCGAGTCGTGGGCTGGGCGATGTCTGACAAGCCTGATGCAGAGCTGGCA
ATCAAAGCACTGGAGATGGCCTATCAGCAGCGGGGTTGCCCATCCGGTGTGCTGTTTCACTCCGACCAGGGTAGCCAATA
TGGCAGCAGGGCATTTCGGCAACGACTGTGGCGCTATCGCATGACCCAGAGCATGAGTCGGCGTGGCAACTGCTGGGATA
ACGCCCCGATGGAGCGATTGTTCAGAAGCCTGAAGTCAGAGTGGCTCCCGGCAACGGGATACATGAGCCTGCGGGAAGCA
ACGCGAGATATCAGTTATTACCTGATGGATTACTACAACTGGCGGCGTCCACATCAACACAATGACGGGATACCGCCAGC
AAAAGCCGAGACTCGGCCTAACCAAGTGTCCGGATTTAGTTGA

Protein sequence : 
MTRLRCSFTAEFKLEAASLVLDQGYSVPEASRSLDVGETVLRRWVQQLQSERCGTTPISKALTPEQQKIQVLEARINRLE
REKDILKKGYCSLDGGRVHTYALIDRLREQAPITLVCCAFDIPTSCFYDYLARRRVINRERMKQRSELRRLFKESRDSAG
SRALMSMMRELGYQIGRFKVRNLMKEAGLASKQPGAHRYKVACSERPDIPNLLAREFDVPQPNQVWCGDITYVWTSARWH
YLAVVLDLHTRRVVGWAMSDKPDAELAIKALEMAYQQRGCPSGVLFHSDQGSQYGSRAFRQRLWRYRMTQSMSRRGNCWD
NAPMERLFRSLKSEWLPATGYMSLREATRDISYYLMDYYNWRRPHQHNDGIPPAKAETRPNQVSGFS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
RS04 AAP82949.1 putative transposase Not tested PAPI-2 Protein 5e-87 65
orfB AGK06993.1 IS1359 transposase; OrfB Not tested SGI1 Protein 2e-66 47
orfB AGK07051.1 IS1359 transposase; OrfB Not tested SGI1 Protein 2e-66 47
VC1789 NP_231424.1 transposase OrfAB subunit B Not tested VPI-2 Protein 3e-66 47
orfB YP_001217329.1 transposase OrfAB subunit B Not tested VPI-2 Protein 3e-66 47
orfB ACX47958.1 IS1359 transposase; OrfB Not tested SGI1 Protein 2e-66 47
VPI2_0008c ACA01825.1 transposase OrfAB subunit B Not tested VPI-2 Protein 2e-66 47
orfB AGK06910.1 IS1359 transposase; OrfB Not tested SGI1 Protein 2e-66 47
overlap with orfA characteristic of IS3 family members AGK06947.1 IS1359 transposase; OrfB Not tested SGI1 Protein 2e-66 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
join YP_001142325.1 IS3 family transposase VFG1122 Protein 1e-66 47