Gene Information

Name : cgR_0988 (cgR_0988)
Accession : YP_001137865.1
Strain : Corynebacterium glutamicum R
Genome accession: NC_009342
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1092598 - 1093365 bp
Length : 768 bp
Strand : +
Note : -

DNA sequence : 
ATGTTCCAACGCGTGGACGTCTTCATTGGGAAGAAGTCTGTCACGGACTGGAAGACGAAAAGGGTATCGATGAAAATTTT
AGTTGTTGATGATGAGCAAGCTGTACGTGACTCCTTGCGACGTTCCCTTTCGTTCAACGGATACAACGTTGTTCTCGCAG
AAGACGGCATCCAAGCACTAGAGATGATTGACAAGGAACAGCCTGCTTTGGTGATCCTCGATGTCATGATGCCTCGTATG
GACGGACTTGAGGTCTGTCGTCACCTTCGCAGCGAAGGCGATGATCGGCCAATTCTTATTCTTACTGCCCGCGATAATGT
TTCTGATCGTGTCGGTGGCCTCGATGCTGGCGCAGATGACTATTTGGCTAAACCATTTGCTCTTGAAGAGCTGTTGGCGC
GCGTCCGTTCACTGGTGCGTCGCTCTGCAGTGGAATCAAATCAGAGTTCCAACATTGAACAGGCTCTATTATCTTGTGGC
GATTTGACGCTTGACCCAGAAAGTCGAGATGTCTACCGCAACGGACGCGCCATCAGCCTTACTCGAACAGAGTTCGCGCT
CCTGCAATTGCTCCTCAAAAACCAAAGGAAAGTGCTCACTCGCGCCCAGATTTTGGAAGAGGTCTGGGGCTATGATTTCC
CCACTTCAGGCAATGCCCTCGAGGTCTACATTGGATACCTTCGACGCAAGACTGAATTGGAAGGAGAAGACCGCCTGATC
CATACAGTACGAGGAGTCGGATACGTCCTGCGAGAGACCGCTCCGTGA

Protein sequence : 
MFQRVDVFIGKKSVTDWKTKRVSMKILVVDDEQAVRDSLRRSLSFNGYNVVLAEDGIQALEMIDKEQPALVILDVMMPRM
DGLEVCRHLRSEGDDRPILILTARDNVSDRVGGLDAGADDYLAKPFALEELLARVRSLVRRSAVESNQSSNIEQALLSCG
DLTLDPESRDVYRNGRAISLTRTEFALLQLLLKNQRKVLTRAQILEEVWGYDFPTSGNALEVYIGYLRRKTELEGEDRLI
HTVRGVGYVLRETAP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-31 43
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 7e-31 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cgR_0988 YP_001137865.1 hypothetical protein BAC0083 Protein 1e-31 48
cgR_0988 YP_001137865.1 hypothetical protein BAC0125 Protein 1e-34 44
cgR_0988 YP_001137865.1 hypothetical protein HE999704.1.gene1528. Protein 2e-35 44
cgR_0988 YP_001137865.1 hypothetical protein BAC0308 Protein 9e-32 44
cgR_0988 YP_001137865.1 hypothetical protein BAC0197 Protein 1e-31 43
cgR_0988 YP_001137865.1 hypothetical protein NC_003923.1003417.p0 Protein 1e-32 42
cgR_0988 YP_001137865.1 hypothetical protein NC_013450.8614146.p0 Protein 1e-32 42
cgR_0988 YP_001137865.1 hypothetical protein NC_002951.3238224.p0 Protein 1e-32 42
cgR_0988 YP_001137865.1 hypothetical protein NC_007793.3914065.p0 Protein 1e-32 42
cgR_0988 YP_001137865.1 hypothetical protein NC_002758.1121390.p0 Protein 1e-32 42
cgR_0988 YP_001137865.1 hypothetical protein NC_010079.5776364.p0 Protein 1e-32 42
cgR_0988 YP_001137865.1 hypothetical protein NC_002952.2859858.p0 Protein 1e-32 42
cgR_0988 YP_001137865.1 hypothetical protein NC_007622.3794948.p0 Protein 1e-32 42
cgR_0988 YP_001137865.1 hypothetical protein BAC0487 Protein 2e-20 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cgR_0988 YP_001137865.1 hypothetical protein VFG1390 Protein 2e-70 66
cgR_0988 YP_001137865.1 hypothetical protein VFG1386 Protein 4e-44 48
cgR_0988 YP_001137865.1 hypothetical protein VFG1389 Protein 5e-39 48
cgR_0988 YP_001137865.1 hypothetical protein VFG0596 Protein 1e-31 43