Gene Information

Name : Mflv_2788 (Mflv_2788)
Accession : YP_001134053.1
Strain : Mycobacterium gilvum PYR-GCK
Genome accession: NC_009338
Putative virulence/resistance : Unknown
Product : integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 2937441 - 2938394 bp
Length : 954 bp
Strand : -
Note : PFAM: Integrase, catalytic region; KEGG: mmc:Mmcs_5602 putative transposase for insertion element IS6110 (second part)

DNA sequence :
GTGGAGTTCATCAGCGCCCACCAGCACATGCGTGTGGGCGCTGATGGTCTCAAGTGGGGTGTCGAGTCGATGTGCGCCGT
GCTCTCGGAGTTCGGCGTCGTGATCGCCCCGTCGACGTATTACGCCCACCGCGCCCGCCGTGGCCCCTCGAAGGCGGACT
GGACTGATGCGCAGGTGATCGACGCCATCTGGCGGCTGCGCCGATCCAACAAGCTGTTCGCGGTTCTGGGTGCCCGTAAG
ACGTGGATTGTGTTGCGTACCAACGGACTCGATGTCTCACGGTGTGTTGTGGAGCGGGTCATGCGGGAGATGGGTTGGCG
GGGTGCGTGCAAGCGCCGCCGGGTGCGCACCACCATTGCTGATCCGGCAGCAACGCGAGCTCCGGATCGGGTCGCGCGGC
ATTTCGTCGCCGGCGCGCCGGACCGTTTGTGGGTGGCCGATTTCACGTACTGCCGGACCCGTGCCGGCTGGGCCTACACA
GCGTTCGTGACCGACGTCTACGCCCGCAAGATCGTAGGCTGGAAGGTGGCCACCGAGATGACCCAGAAGCTGGTGACCGA
TGCGATCAACCACGCCATAGATACCAGGAAGCGTTCTGGTGCGACATTTTTGGATGATCTGATCCATCACAGCGATGCGG
GCTCTCAATATACGGCGGTAGCGTTCACTGAACACTTGGCCGCTGAAGGGATCCTGCCCTCAGTCGGATCGGTGGGCGAT
AGCTTCGACAACGCCTTGGCCGAATCGGTGAACAGCAGCTACAAGACCGAACTCATCGACCACCAGCCGCCGTATCCCGG
TGCCGCCGAACTCTCGCTGGCAACCGCCGAATGGGTGGCTTTCTACAACCGGCAGCGACCGAATGGCTACTGCCAGGACC
TGACTCCGGACCGGGCCGAAGCCCTCTATTACCATCGCCAACGGCACCCTCATACCGAGGAGGCACTCAGATAA

Protein sequence :
MEFISAHQHMRVGADGLKWGVESMCAVLSEFGVVIAPSTYYAHRARRGPSKADWTDAQVIDAIWRLRRSNKLFAVLGARK
TWIVLRTNGLDVSRCVVERVMREMGWRGACKRRRVRTTIADPAATRAPDRVARHFVAGAPDRLWVADFTYCRTRAGWAYT
AFVTDVYARKIVGWKVATEMTQKLVTDAINHAIDTRKRSGATFLDDLIHHSDAGSQYTAVAFTEHLAAEGILPSVGSVGD
SFDNALAESVNSSYKTELIDHQPPYPGAAELSLATAEWVAFYNRQRPNGYCQDLTPDRAEALYYHRQRHPHTEEALR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 5e-40 47
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 2e-43 44
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 2e-43 44
Z1198 NP_286733.1 transposase Not tested TAI Protein 3e-42 43
Z1638 NP_287141.1 transposase Not tested TAI Protein 3e-42 43
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 1e-42 43
Z1221 NP_286756.1 transposase Not tested TAI Protein 9e-43 43
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 8e-42 43
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 4e-40 43
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 3e-42 43
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 4e-40 43
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 4e-40 43
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 2e-40 43
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 6e-42 43
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 2e-42 43
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 1e-40 42
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 2e-31 42
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 8e-41 42
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 8e-43 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Mflv_2788 YP_001134053.1 integrase catalytic subunit VFG1602 Protein 4e-41 42