Gene Information

Name : Cvib_0113 (Cvib_0113)
Accession : YP_001129639.1
Strain : Chlorobium phaeovibrioides DSM 265
Genome accession: NC_009337
Putative virulence/resistance : Unknown
Product : integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 133102 - 133917 bp
Length : 816 bp
Strand : +
Note : PFAM: Integrase, catalytic region; KEGG: yps:pYV0019 putative transposase

DNA sequence :
ATGACGGTGGCATACCAGGTGTCGATCAAGAAAGCTTGCGCGGCATTGCCGATGCATCGCTCAGCGCTGTATTACAAGCC
GCACAAGCGGGACGAAGCATTGCTTGTGATGCGTATGCGGGAAATCGCATACACCCGCATACGGTTTGGGTTTGAGCGGA
TTGTGCTCACACTCAGACGAGAAGGCTTTACCGACAATCACAAGCGACTGCGTCGGATTTATCGCGAACAGGGCCTGAAC
TTGAGAACGAAGCGCCCGAGCAGAAATCGCAGTGGGCAACACCGAGTAGAAAAGGTAGAGGCCGTTCGAGCGAATCAGAC
CTGGAGCATGGACTTCGTTGCCGATCAGTTGTTCGACGGCAGGAAATTTCGGATTTTGACGATAGTTGACAACTTCAGCA
AGAAATGCCCTGGTCTGTTCGCCGGTCAAAGCATTAAAGGTGCAGATGTTGTCAACTTTCTTGAAACAGCGGTCGCTCGC
GAGGGCGCTATACCGGAGCGGATACAGGTTGACAACGGCAGCGAGTTCATTTCAAAGGAACTGGATCGATGGGCATATGA
GAACAAGGTCGTTCTGGCGTTCTCTCGACCTGGCAAGCCGACCGATAACCCGTATATTGAATCATTCAACGGGAAGTTCC
GGGATGAATGCCTGTCGACCCATTGGTTCAATAGCCTTGACGATGTTCGAGGCAAAATCGAGGAGTGGCGAAACGATTAC
AACGGCTTCAGGCCCCATTATTCTTTGAGTGGTTTGACCCCGAATGAATTTCTTGCATTACAACAAAATAGGCCGGAAGC
TCTAGTTTCAAGGTGA

Protein sequence :
MTVAYQVSIKKACAALPMHRSALYYKPHKRDEALLVMRMREIAYTRIRFGFERIVLTLRREGFTDNHKRLRRIYREQGLN
LRTKRPSRNRSGQHRVEKVEAVRANQTWSMDFVADQLFDGRKFRILTIVDNFSKKCPGLFAGQSIKGADVVNFLETAVAR
EGAIPERIQVDNGSEFISKELDRWAYENKVVLAFSRPGKPTDNPYIESFNGKFRDECLSTHWFNSLDDVRGKIEEWRNDY
NGFRPHYSLSGLTPNEFLALQQNRPEALVSR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
XCV0439 YP_362170.1 ISRSO12 transposase (fragment) Not tested Hrp PAI Protein 1e-53 54
unnamed ABR13352.1 insertion sequence IS407 OrfB Not tested PAGI-5 Protein 7e-40 45
unnamed ABR13540.1 insertion sequence IS407 OrfB Not tested PAGI-8 Protein 2e-48 42
EXB25 ABD94712.1 hypothetical protein Not tested ExoU island B Protein 5e-26 41