Gene Information

Name : fliP (GTNG_1087)
Accession : YP_001125208.1
Strain : Geobacillus thermodenitrificans NG80-2
Genome accession: NC_009328
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 1150304 - 1150972 bp
Length : 669 bp
Strand : +
Note : FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus

DNA sequence :
ATGAATGAATTTGTCCATATGTTTAATTCAATGGCTCCCGAGCATGTGTCGACATCGGTGAAATTGCTGCTGTTGCTCAC
TGTCTTGTCGATTGCTCCTGGCATTTTAATTATGATGACGTGTTTTACACGCATTGTCATCGTTCTGTCGTTCGTGCGTA
CGTCGCTCGGCACGCAGCAAATGCCGCCGAACCAAGTGTTGATTGGGTTGGCGTTGTTTTTGACATTTTTCATTATGGCG
CCAACATGGAAAGACATCAATGATCAGGCGTTGCAGCCGTTATTTGCCGAAAAAATTGATTTGGATGAGGCGTACGAACG
TGCTGCCATTCCGCTTAAGCAGTTTATGAGCAAGCACACACGGCAGCAAGATTTGGCGCTGTTTTTATCATACAGCGGCG
CTGAACAGCCGAAAACGGTCAACGACATCCCGTTGACTGCGCTCGTGCCAGCGTTTGCGATTAGCGAGCTGAAGACGGCG
TTTCAAATGGGCTTTATGATTTTTATTCCGTTTTTAGTCATCGACATGATTGTCGCCAGCGTCTTAATGTCAATGGGGAT
GATGATGCTGCCGCCGGTGATGATTTCGCTGCCGTTTAAAATTTTGTTGTTTGTTCTTGTTGACGGCTGGTACTTAGTCG
TCAAATCATTGTTGCAAAGTTTTCAATAA

Protein sequence :
MNEFVHMFNSMAPEHVSTSVKLLLLLTVLSIAPGILIMMTCFTRIVIVLSFVRTSLGTQQMPPNQVLIGLALFLTFFIMA
PTWKDINDQALQPLFAEKIDLDEAYERAAIPLKQFMSKHTRQQDLALFLSYSGAEQPKTVNDIPLTALVPAFAISELKTA
FQMGFMIFIPFLVIDMIVASVLMSMGMMMLPPVMISLPFKILLFVLVDGWYLVVKSLLQSFQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 2e-22 41
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 2e-22 41
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 2e-22 41
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 6e-16 41
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 4e-16 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_001125208.1 flagellar biosynthesis protein FliP VFG1259 Protein 6e-45 60
fliP YP_001125208.1 flagellar biosynthesis protein FliP VFG2494 Protein 6e-44 58
fliP YP_001125208.1 flagellar biosynthesis protein FliP VFG2016 Protein 2e-44 56
fliP YP_001125208.1 flagellar biosynthesis protein FliP VFG2338 Protein 3e-42 54
fliP YP_001125208.1 flagellar biosynthesis protein FliP VFG0044 Protein 5e-28 41