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Name : Bcep1808_0004 (Bcep1808_0004) Accession : YP_001117867.1 Strain : Genome accession: NC_009256 Putative virulence/resistance : Unknown Product : HsdR family type I site-specific deoxyribonuclease Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : 3.1.21.3 Position : 6157 - 9279 bp Length : 3123 bp Strand : - Note : KEGG: sth:STH1908 type I restriction-modification system endonuclease; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases-like DNA sequence : ATGAGCGGTATCAGCGAGGATGCTGTCGAACAGGCGATGCTTGAATGGCTGGCCAATTTGGGCTGGCAGACCGCCCACGG CCCCGACGTATCCCCCCCGGACGCCAAGACTCCGGGCACGGAACGCAACAGCTATCGCGACGTGGCACTGCGTCACCGCC TGGCTGCTGCCATTGCCAAGCTGAACCCGCAAATTCCCGCCGTCGCCCGCGACGACGCGCTGCGCCGTGCGCTAAATCCG AACACACCCGGCCACGTCAACGCGAATCGCCAGCTCTACCGCTGGCTTGTGGACGGCGTGCCGGTTGAGTTCCAGAAAGA CGGTGAAACGCGCGGCGACCGCGTGCGCCTGGTCGATTTTACAGACATCGCCGCGAACGACTGGCTCGCCGTCAACCAGC TCGCATTTCAGGGGCCAAAGCAGCTTCGCCGTCCCGATGTCGTGCTGTACCTCAACGGCCTGCCGATTGTCGTGGTCGAG CTGAAAAATCCCGGCGATGAGAACGCCGACATCTGGGCTGCCTGGAACCAGCTTCAGACCTACCATCAAGACATCCCCGA CCTGTTCAATGCCAACGTGCTTGAAGTCATTTCGGACGGCACCACGGCCCGTATGGGCTCGCTCACATCGAACAAGGAAC GCTTCCTGGCCTGGTGCACCATTGACGGCAATGAAATCGACCCGCTTGGCGCGATGCGTGAGCTGGAAACCTTGACGCGG GGCCTGTTCCGGCGCGACTACCTGCTCGAATACCTGCGCCACTTCATCCTGTTCGAGGACGACGGCCAGCTCATCAAGAA AGTCGCCGCCTATCACCAGTTCCACGCCGTACGCGCGGTCGTGCAAAGCGTACTGCAAGCCTCAGCCCCAGGAGGTTCGC GCAAGGGCGGCGTGGTCTGGCATACGCAGGGCGCGGGCAAGAGCATCGAGATGACTTGCCTGGCTGGTGCGCTGATGGCC CACGAAGACATGGGTAACCCAACGCTCGTGGTCGTGACAGACCGCAATGACCTCGACAACCAGCTATTCGGGGTCTTTGC TGGTGCGAAGGAGCTGCTGCGTGAAACCCCGGTACAGGCCGACACCCGGCCTGAACTGCGCCGTCTACTGGCAAATCGCC CGTCCGGCGGAATCATCTTCACGACCATCCAGAAGTTCACGCCCGGGACGGACGAAGACACGTTCCCCGTCCTGTCCAGC CGCCGCAATATTGTTGTGATTTGCGACGAGGCTCACCGCAGCCAGTATGGTTTTGACGCCCGCCTACCAATTACGGACTG CAAGGGCGAAAGCACGGCCGTTCGCTATGGTTATGCGCAATATCTGCGCGACGCGCTGCCCGAAGCCACTTTCGTCGCCT TCACTGGCACGCCAGTATCACTCGATGACCGTGACACGCGCGCCGTGTTTGGCGACTACGTCCATATCTATGACATTGAG CAGGCGGTAAAGGATGGCGCTACCGTACCCATCTACTACGAAAGCCGCCTCGCCAGCCTGGAGCTGAAAGAGGGAGACGC GAGCATTCTCGATGACGAGGTGGACGAGCTGACCGAGGACGAGGAGAACGACGAGGCCAAGGTTGCGACGCTGCGCCGCT GGGCTGCTCTGGAGAAAATCGTCGGCGCGCCGCCGCGTATCCAGAAAGTCGCCGCCGACATCGTCAGCCACTTTGAGAAC CGCCAGGCCGTCATGGACGGCAAGGCAATGATTGTCGCGATGAGCCGCGACATCTGCGTGCATCTGTACAACGCGATTAC CCAACTTCGCCCGGAATGGCACAGCGACGACTCCACACAGGGTGCCATCAAGATAGTGATGACCGGTTCGGCGTCCGACA AGGCGATGCTTAAGCCGCATATCTACTCGAAGAAGGTGCGCGACGACCTCGAAAAGCGCTTCAAGGACCCATCAGACCCT TTTAAGCTCGTCATTGTCCGCGACATGTGGCTCACCGGCTTTGATGCACCGTGTATGCACACCATGTACATCGACAAGCC GATGCGCGGCCACAGCCTGATGCAGGCCATCGCCCGCGTGAATCGGGTTTTCAAAGACAAACCTGGCGGTTTGGTAGTCG ACTATATCGGCATCGCGAACGAGCTGAAAGCTGCCCTCGCGACCTACACTCAGGCCCGTGGACGTGGCCGACCGACCATC GACGCGCGCGAAGCCTTGGCAGTCCTGGCCGAAAAGATAGACGTGCTGCACAACATGCTGCACGGCGTCGATTACGCAGC GTTCCGTTCGCAGGCGTGGCAACTGCTACCCGCTGTGGCGAACCATGTGCTCGGTCAGGACGACGGCAAGAAGCGCTTTG CCGACACGGTGCTTGCAGCGAGCAAAGCATTCGCGTTGTGCTGCACGCTCGCGGAAGCGCTTGCGTATCGTGACGAGCTA GCCTTCCTGCAAGCCGTGAAGGCCGCGCTTATCAAGCATGACGGCGCTGACAAGGCGTTGACCGACGAGCAGAAGGAACA TGCGCTGCGGCAAATTATTAGCCGGGCCGTGGTCAGCGACCAGGTCATCGACGTCTTTTCTGCGGCAGGCCTGAAGCGTC CCGACATCAGCGTGCTCTCGGATGGCTTTCTCGAGGATGTGCGCCACATGCAGCAACGCAACCTGGCTGTCGAGCTGCTG GAGCGCCTGCTAAGAGACCAAATCAAGTCGCGTTTCAAGACCAATGTTGTGCAGAGCGCGAAGTTCTCGGAGCTACTGCA ACAGAGCCTGACGCGTTACCGCAACCGTGCCGTGGAGACCGCCCAGGTCATCGAGGAACTGATTGCGATGGCGAAGAAGT TCCAGGTTGAGGCTCAGCGCGGTATGGAGTTAGGCCTGAGCCCCGACGAGATGGCGTTCTATGATGCCCTTGCGACCAAC GAAGCCGCTGTGCGCGAGCTAGGCGATGACACGCTTAAGAAAATCGCAGTTGAGCTGGTCGTGAAGTTGCGGGGCTCGGT CACGGTCGATTGGTCGAAGCGGGAAACCGTGCGTGCAAGGCTGCGTGTGATGGTGAAGACGCTGCTCAAGCGCTATAAGT ACCCACCGGACCGGCAAGAGGAGGCAACGGATACTGTCCTGTCGCAGGCGGAATCGCTTTCATTAGCTTGGGTTGGAGCA TAG Protein sequence : MSGISEDAVEQAMLEWLANLGWQTAHGPDVSPPDAKTPGTERNSYRDVALRHRLAAAIAKLNPQIPAVARDDALRRALNP NTPGHVNANRQLYRWLVDGVPVEFQKDGETRGDRVRLVDFTDIAANDWLAVNQLAFQGPKQLRRPDVVLYLNGLPIVVVE LKNPGDENADIWAAWNQLQTYHQDIPDLFNANVLEVISDGTTARMGSLTSNKERFLAWCTIDGNEIDPLGAMRELETLTR GLFRRDYLLEYLRHFILFEDDGQLIKKVAAYHQFHAVRAVVQSVLQASAPGGSRKGGVVWHTQGAGKSIEMTCLAGALMA HEDMGNPTLVVVTDRNDLDNQLFGVFAGAKELLRETPVQADTRPELRRLLANRPSGGIIFTTIQKFTPGTDEDTFPVLSS RRNIVVICDEAHRSQYGFDARLPITDCKGESTAVRYGYAQYLRDALPEATFVAFTGTPVSLDDRDTRAVFGDYVHIYDIE QAVKDGATVPIYYESRLASLELKEGDASILDDEVDELTEDEENDEAKVATLRRWAALEKIVGAPPRIQKVAADIVSHFEN RQAVMDGKAMIVAMSRDICVHLYNAITQLRPEWHSDDSTQGAIKIVMTGSASDKAMLKPHIYSKKVRDDLEKRFKDPSDP FKLVIVRDMWLTGFDAPCMHTMYIDKPMRGHSLMQAIARVNRVFKDKPGGLVVDYIGIANELKAALATYTQARGRGRPTI DAREALAVLAEKIDVLHNMLHGVDYAAFRSQAWQLLPAVANHVLGQDDGKKRFADTVLAASKAFALCCTLAEALAYRDEL AFLQAVKAALIKHDGADKALTDEQKEHALRQIISRAVVSDQVIDVFSAAGLKRPDISVLSDGFLEDVRHMQQRNLAVELL ERLLRDQIKSRFKTNVVQSAKFSELLQQSLTRYRNRAVETAQVIEELIAMAKKFQVEAQRGMELGLSPDEMAFYDALATN EAAVRELGDDTLKKIAVELVVKLRGSVTVDWSKRETVRARLRVMVKTLLKRYKYPPDRQEEATDTVLSQAESLSLAWVGA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| api52 | CAF28526.1 | hsdr-like Type I restriction enzyme | Not tested | YAPI | Protein | 0.0 | 58 |
| hsdR | YP_251977.1 | type I restriction-modification system restriction subunit | Not tested | SCCmec | Protein | 0.0 | 47 |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 0.0 | 47 |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 0.0 | 47 |
