Gene Information

Name : Bcep1808_4125 (Bcep1808_4125)
Accession : YP_001116570.1
Strain :
Genome accession: NC_009255
Putative virulence/resistance : Unknown
Product : integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 924613 - 925392 bp
Length : 780 bp
Strand : +
Note : PFAM: Integrase, catalytic region; KEGG: rso:RSp0548 ISRSO8-transposase orfB protein

DNA sequence : 
TTGGCCTCCACGAATTCCGTCCGACCTCAATTGCTGACGCTGATCTGGACGGTGCACGCCGAGGTCAAAGGAGCATACGG
TTCGCCGCGCATGACTGAGGAAATCCGTGATCGAGGCTTTCCGGCCAGCAAGGAGCGCGTGGAACGGCTGATGCGTGAGC
ATGGCATCCAGGCGCGGCACAAGCGCCGTTACCGGGTGACGACCGATTCGAAACACAAGCTGCCGGTCGCGCCAAACCTG
TTGAACCGCGAGTTCACGCCCGCCGCGCCGAATCAGGTGTTCAGCTCGGACATCACATATATCTGGGCCGACGAGGGCTG
GCTGTACCTGGCCGTGGTGCTCGACCTGTTCAACCGGGAGGTGGTGGGCTGGTCGATCAAGCCGCGCATGACGGCGGGTC
TCGTGACGGACGCGCTGACGATGGCTTGGTTCCGCCGCCGTCCCGCGCCGGGTGCACTGTGCCATTCGGATAGAGGCAGC
CAATACGCGAGTCACGAGTTCCAGCGCAAGCTGAGCGCCTACGGCATGCGCTGCTCAATGAGTCGCAAGGGAAGCTGTTG
GGACAATGCCCCAACGGAAAGCTTCTTCAACAGCTTGAAGAACGAACGGGTTCACGCCACGCGCTACCGGACGCATCAGG
ACGCGAAGGCCGATCTGTTCGAATACATCGAAGTGTTTTACAACCGCACTCGTCGTCATTCGTCGCTCGGCTTTGTGTCT
CCGGAAAGGTATCTTCAGGACTGGATCAACGCTCAGCAGACCAAGAATGCGGCTGCATAA

Protein sequence : 
MASTNSVRPQLLTLIWTVHAEVKGAYGSPRMTEEIRDRGFPASKERVERLMREHGIQARHKRRYRVTTDSKHKLPVAPNL
LNREFTPAAPNQVFSSDITYIWADEGWLYLAVVLDLFNREVVGWSIKPRMTAGLVTDALTMAWFRRRPAPGALCHSDRGS
QYASHEFQRKLSAYGMRCSMSRKGSCWDNAPTESFFNSLKNERVHATRYRTHQDAKADLFEYIEVFYNRTRRHSSLGFVS
PERYLQDWINAQQTKNAAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 2e-48 48
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 2e-48 48
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 2e-48 48
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 4e-46 48
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 4e-46 47
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 4e-46 47
c3575 NP_755450.1 transposase insF Not tested PAI I CFT073 Protein 2e-48 46
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 1e-48 46
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 1e-48 46
hp1 AAC61713.1 Hp1 Not tested PAI I CFT073 Protein 2e-48 46
insF CAC43414.1 transposase of insertion element IS3 Not tested PAI III 536 Protein 2e-43 46
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 3e-48 45
unnamed AAF09030.1 unknown Not tested SHI-O Protein 3e-48 45
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 3e-48 45
unnamed AAF09022.1 unknown Not tested SHI-O Protein 3e-48 45
tnpB CAB61574.1 transposase B Not tested HPI Protein 2e-42 44
trp1329B CAB46576.1 IS1329 transposase B Not tested HPI Protein 9e-43 44
unnamed AAQ07468.1 TnpI-like protein Not tested Not named Protein 2e-46 44
RS04 AAP82949.1 putative transposase Not tested PAPI-2 Protein 3e-33 43
orfB CAE85178.1 OrfB protein, IS911 Not tested PAI V 536 Protein 2e-36 41
l7094 CAD33743.1 ORF B protein Not tested PAI I 536 Protein 2e-36 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Bcep1808_4125 YP_001116570.1 integrase catalytic subunit VFG1706 Protein 1e-48 46
Bcep1808_4125 YP_001116570.1 integrase catalytic subunit VFG1631 Protein 1e-43 46
Bcep1808_4125 YP_001116570.1 integrase catalytic subunit VFG1484 Protein 1e-36 41