Gene Information

Name : Bcep1808_5343 (Bcep1808_5343)
Accession : YP_001117756.1
Strain :
Genome accession: NC_009255
Putative virulence/resistance : Virulence
Product : HrpO family type III secretion protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4794
EC number : -
Position : 2284362 - 2284640 bp
Length : 279 bp
Strand : -
Note : TIGRFAM: type III secretion protein, HrpO family; PFAM: export protein FliQ, family 3; KEGG: bam:Bamb_4229 type III secretion protein, HrpO family

DNA sequence : 
ATGACCAGCTCGACGATTCTCGACCTGACGCGTCAGGCGCTGATGCTGGTGCTGCTGCTGTCGCTGCCGATCGTCGCGAT
CGCCACCGTCACGGGCCTCGTCGTCGCGATCCTGCAGGCCGTCACGCAGGTGCAGGACGCCAACATCGGCATCGTGGTGC
GGCTGATCGCCGTGATGGTCGCGCTGGTGCTGCTGTCCGGCTGGCTCGGCAGCGAAGTGCTGCGCTTCGCGCAGCAGGCG
CTGGAACGCATGTTCGTTTCTTCCACAGGAGTGCTTTGA

Protein sequence : 
MTSSTILDLTRQALMLVLLLSLPIVAIATVTGLVVAILQAVTQVQDANIGIVVRLIAVMVALVLLSGWLGSEVLRFAQQA
LERMFVSSTGVL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcS AAB06006.1 HrcS Virulence Hrp PAI Protein 6e-07 47
lscS AAO18039.1 LscS Virulence TTSS locus Protein 3e-08 43
hrcS AAT96263.1 HrcS Virulence S-PAI Protein 4e-05 43
hrcS AAT96304.1 HrcS Virulence S-PAI Protein 4e-05 43
hrcS AAT96344.1 HrcS Virulence S-PAI Protein 4e-05 43
hrcS ABA47280.1 HrcS Virulence S-PAI Protein 2e-05 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Bcep1808_5343 YP_001117756.1 HrpO family type III secretion protein VFG0187 Protein 4e-06 50
Bcep1808_5343 YP_001117756.1 HrpO family type III secretion protein VFG1013 Protein 5e-10 45
Bcep1808_5343 YP_001117756.1 HrpO family type III secretion protein VFG0395 Protein 9e-09 43