Gene Information

Name : Bcep1808_5561 (Bcep1808_5561)
Accession : YP_001114754.1
Strain :
Genome accession: NC_009254
Putative virulence/resistance : Unknown
Product : integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 115479 - 116315 bp
Length : 837 bp
Strand : -
Note : PFAM: Integrase, catalytic region; KEGG: bch:Bcen2424_6833 integrase, catalytic region

DNA sequence :
ATGAAGACGGTCTGCGAAGTTCTCGGCGTGGCGCGCTCTGCCGTGGCGGTGAAGCGAGTTCGCTCGTCCGACTGGCGCGA
TGGTCGCCGTGCCCGCGTGACCAACGATGCCGGGCTGGTCGAGGAGATTCAGGCCCATGTGGCGCACCTTCCCACCTACG
GCTACCGCCGTGTCTGGGCGCTGCTGCGCCGCAGTCGGGAGCAGAGCGGTGCGCCGTGCATCAACGTCAAGCGCGTGTAT
CGGGTCATGCGGGAGCATCAGTTGCTACTGCGCCGCCCCGGCGTGCGGCAAGACAAGCGGCGGCATGACGGTCGCGTTGC
CGTGGACCGCAGCAACACCCGCTGGTGCTCCGATGGCTTCGAGTTCCGGTGCGACGATGGTACGCCGCTGCGCGTGACGT
TTGCGCTGGACTGCTGCGACCGCGAGGCGATTAGCTGGGCAGCAACGACCGGCGGGCATAGCGGTGATGTGGTGCGCGAC
GTGATGCTGGCCGCCGTCGAACAGCGCTTCGGCACCACGCAGGCCGCGCAGTCCATCGAATGGCTGACGGACAACGGCTC
GGCCTACATCGACCACCGCACGCGCAGCTTCGCTCGCGAACTGGGTCTTGAGCCGCTGACCACACCGGTCCGTTCGCCGC
AGAGCAATGGCATGGCGGAATCGTTCGTGAAGACCATGAAGCACAATTACGTCGCCTATATGGACAAGCCCGACGCACCA
ACGGCGCTCTCGCGTCTGGCTATCGCGTTCGAACACTACAATGAGCGCCACCCGCACAAAGCCCTGAAATACCGCTCGCC
TCGCGAGTTCAGGCGTAATGCGGTGTCATCAACCTAA

Protein sequence :
MKTVCEVLGVARSAVAVKRVRSSDWRDGRRARVTNDAGLVEEIQAHVAHLPTYGYRRVWALLRRSREQSGAPCINVKRVY
RVMREHQLLLRRPGVRQDKRRHDGRVAVDRSNTRWCSDGFEFRCDDGTPLRVTFALDCCDREAISWAATTGGHSGDVVRD
VMLAAVEQRFGTTQAAQSIEWLTDNGSAYIDHRTRSFARELGLEPLTTPVRSPQSNGMAESFVKTMKHNYVAYMDKPDAP
TALSRLAIAFEHYNERHPHKALKYRSPREFRRNAVSST

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAC39284.1 hypothetical protein Not tested LPA Protein 2e-76 64
tnpF AAD44739.1 TnpF Not tested SHI-2 Protein 2e-74 64
SF3721 NP_709460.1 IS2 transposase TnpB Not tested SHI-2 Protein 6e-76 64
S4061 NP_839230.2 insertion element IS2 transposase InsD Not tested SHI-2 Protein 4e-76 64
S3189 NP_838472.2 insertion element IS2 transposase InsD Not tested SHI-1 Protein 2e-75 64
S4050 NP_839218.2 insertion element IS2 transposase InsD Not tested SHI-2 Protein 6e-76 64
SF3708 NP_709447.1 IS2 transposase TnpB Not tested SHI-2 Protein 6e-76 64
unnamed AAL67379.1 transposase-like protein Not tested PAI II CFT073 Protein 1e-73 63
SF2985 NP_708759.1 insertion element IS2 transposase InsD Not tested SHI-1 Protein 4e-73 63
insD YP_002414033.1 insertion element IS2 transposase InsD Not tested Not named Protein 4e-75 63
ECO111_3773 YP_003236109.1 putative IS2 transposase InsAB Not tested LEE Protein 2e-75 62
aec49 AAW51732.1 Aec49 Not tested AGI-3 Protein 6e-75 62
unnamed CAC39283.1 hypothetical protein Not tested LPA Protein 4e-74 61

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Bcep1808_5561 YP_001114754.1 integrase catalytic subunit VFG0608 Protein 3e-76 64
Bcep1808_5561 YP_001114754.1 integrase catalytic subunit VFG0621 Protein 3e-76 64
Bcep1808_5561 YP_001114754.1 integrase catalytic subunit VFG0649 Protein 2e-73 63
Bcep1808_5561 YP_001114754.1 integrase catalytic subunit VFG1732 Protein 2e-75 63