Gene Information

Name : Dred_3301 (Dred_3301)
Accession : YP_001114626.1
Strain : Desulfotomaculum reducens MI-1
Genome accession: NC_009253
Putative virulence/resistance : Unknown
Product : replicative DNA helicase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0305
EC number : -
Position : 3582976 - 3584298 bp
Length : 1323 bp
Strand : -
Note : KEGG: chy:CHY_0041 replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase, N-terminal domain protein; DnaB domain protein helicase, C-terminal domain protein; SMART: AAA ATPase

DNA sequence :
ATGCTAGATCGTGTACCACCACAGAATTTAGAAGCAGAACAATCGGTACTGGGAGCGATGCTCCTGGAGAGGGACGCCAT
TTTCCGTGTTATGGAATTCCTAAAACCGGAGGATTTTTACCGGGACAGTCATCGGATTATCTATGAGGTTATTTTAGAAT
TGGCCGAAGCAGGACGCCCGGTTGACTTAATTACCGTTTCGGATATCCTGAGGGACAGGGGAGATCTGGAAAAAATAGGT
GGTGTAACCTATGTAGCCACCCTCGCCAATTTAGTACCAACCGCAGCCAATGCGGAATATTACGCCCGTATCGTGGAGGA
AAAGGCGCTCTCCCGGGCGCTTATCTCGGTCACCACCCGCATATCCTCCAGGGGCTACGAAGGGACAGAAAGCCCGGAGG
AGCTACTGGAGGACGCTGAACGTTCAATTTTAGAGCTGGGCCAACGTCGTAGCACCGATAGTTTTACCCCAATAAAAGAA
ATCTTAATTAAGGCCTTTGAGAATATTGAACAGGTCTATAATAACAGGGGTAAAATTACGGGTGTACCGACGGGTTTTAT
TGAACTGGACAACATGACCAACGGCTTTCAGCCGGGAGATTTGGTGATTCTGGCAGCACGTCCCAGTATGGGTAAAACGG
CCTTTGCTATCCTATGTGGTCAGTATGCGGCACTCAAACATCAGATTCCAGTGGCCATATTCAGCTTAGAAATGTCCAAA
GAACAGCTGGTACAACGTATGCTTTGTTCGGAAGCAATGGTAGATGCCCATAAAGTCAGAACCGGCAACATTGCCGATGA
AGATTGGGGTAAGCTAAGCGAGGCTGCCAGGCACTTATCCCGGGCGCCCATCTTCTTGGATGATACAGGTGCAGCTACGG
TAAGGGAAGTAAGGTCCAAGTGCAGGCGCTTGAAGGCTGAGAAGGGGCTAGGATTGGTGATTATTGACTACCTGCAATTA
ATGTCTGGTGGTAAGCGTATTGAAAACCGTCAACAGGAAATTGCCGAGATATCAAGGAAATTAAAGGGCTTGGCCAAGGA
GCTAAGTGTTCCGGTGTTGGCGCTATCCCAGTTGAGCCGTGCGGTGGAGAGCCGTACCGACAAACATCCTATGATGTCTG
ACCTGCGGGAAAGTGGCAGCATTGAGCAGGATGCTGACATAATTATGTTTATTTATCGGGATGAGTATTATAATCCGGAT
TCAGAAAAGAAGGGCATCGCAGAAATAATTATTGCGAAGCAGCGTAACGGTTCTGTTGGCCCAGTGGAATTGGGCTTTTT
CAAGGAATTTGTAAAATTTGTTAACTTAGCCAAACGAGACTAA

Protein sequence :
MLDRVPPQNLEAEQSVLGAMLLERDAIFRVMEFLKPEDFYRDSHRIIYEVILELAEAGRPVDLITVSDILRDRGDLEKIG
GVTYVATLANLVPTAANAEYYARIVEEKALSRALISVTTRISSRGYEGTESPEELLEDAERSILELGQRRSTDSFTPIKE
ILIKAFENIEQVYNNRGKITGVPTGFIELDNMTNGFQPGDLVILAARPSMGKTAFAILCGQYAALKHQIPVAIFSLEMSK
EQLVQRMLCSEAMVDAHKVRTGNIADEDWGKLSEAARHLSRAPIFLDDTGAATVREVRSKCRRLKAEKGLGLVIIDYLQL
MSGGKRIENRQQEIAEISRKLKGLAKELSVPVLALSQLSRAVESRTDKHPMMSDLRESGSIEQDADIIMFIYRDEYYNPD
SEKKGIAEIIIAKQRNGSVGPVELGFFKEFVKFVNLAKRD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed ABR13456.1 replicative DNA helicase Not tested PAGI-5 Protein 2e-73 43
PMI2640 YP_002152342.1 DNA helicase Not tested Not named Protein 3e-67 43
STY4522 NP_458617.1 DNA helicase Not tested SPI-7 Protein 2e-62 42
t4227 NP_807829.1 DNA helicase Not tested SPI-7 Protein 2e-62 42
api2 CAF28476.1 putative DNA binding protein with DNA-dependent ATPase activity Not tested YAPI Protein 4e-70 41
dnaB2 YP_001402701.1 replicative DNA helicase Not tested YAPI Protein 2e-69 41
dnaB CAI36044.1 replicative DNA helicase DnaB Not tested PPHGI-1 Protein 2e-62 41
dnaB1 YP_005176258.1 replicative DNA helicase Not tested ICEPmu1 Protein 3e-57 41
dnaB2 YP_001007676.1 putative DNA helicase Not tested YAPI Protein 2e-65 41