Gene Information

Name : Dred_1034 (Dred_1034)
Accession : YP_001112394.1
Strain : Desulfotomaculum reducens MI-1
Genome accession: NC_009253
Putative virulence/resistance : Virulence
Product : type II secretion system protein E
Function : -
COG functional category : N : Cell motility
COG ID : COG2804
EC number : -
Position : 1107231 - 1108907 bp
Length : 1677 bp
Strand : +
Note : PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: ace:Acel_1322 type II secretion system protein E

DNA sequence :
ATGAAATTTACCCGTGGTTTTTTAGGTACCTGGTTAGTAAATGAAGGTATTATTAGCCAGAAACAGTTGGAAGATGCCCT
GGAATATCAAAGACAGCACCCGGGGAAAACCGGTGTTCTGGGTAAAACCCTGGTACAGTTGGGGTTTTGTTCAGAGGACG
ATATAGCCAGAATCATTGCCAAGCAGGCGGGGGTTCCCTTTGTGTCACTGGAAAACCATACCATAGACCCTGCAGCTATT
ACTGCCGTGTCTGTAGATGTTATGAAGCGCTATAAAGCCCTGCCCCTGGGTTTTAGTGAAGGAAAGCTGATGGTGGCAAT
GCAAAAACCTACGGATATTGTAGCCATCGATAATTTACGTGTCTTAACAGGCTTTGACATTAAGCCAGTGTTTTCTCCCG
ATAGTGAATTGGACGTTGCCATTGAAAAATATAGCAGAGAAGCAATGGAATTTAACAAGGTTGAAGAAGAAACACCACAA
ATTGAAGAAATTACAGCAAATATAGATGACGACCAGAAACCGGCTGTCCAGTTAGCCAACATGATCTTATCCCAGGCTGT
AGCCGCCAAGGCCAGTGACGTTCATATTGAGAGATATGAACAACGCATGAGGGTACGCTTTAGAATTGATGGTGTATTGC
ATGATATTATGGAGCCGCCGGTAAAGATGCATGCCTCCCTGGTATCTCGCATCAAGGTTATGGCTAATATGGATATAGCC
GACCGCAGGATACCCCAGGACGGACGTATATCCCTGAAAATTGAAGGGAGACCCATTGATATTCGTGTGGCTACCTTACC
CACCAGTTATGGTGAAAGGTTAACCATGCGCCTGTTGGATAACTCAGCCAGAATGATTACCCTGGAAGAACTTGGTGTAG
CACCCAAAATTCTTGAAAGATACCGTGAGATTGTTCAATTACCCTACGGTTTCATACTGGTAACCGGGCCCACCGGCAGT
GGCAAAAGTACCACCCTATATGCCAGCCTAAACGCTGTGGATTGGGTCGGTAAGAATGTTATTACCATTGAAGACCCTGT
GGAATACCGGATGGAAGGCGTAAACCAGATTCAGATTAATCCCCAGGCAGGTCTTACCTTTGCCTCAGGTCTTCGCTCCA
TCCTGCGCAGTGACCCGGATATTATCATGGTGGGTGAGATTCGTGATCAAGAAACTGCAAAAATTGCCATAGAATCGGCC
ATGACTGGACATATGGTCTTTGCTACCCTACATACCAATGATGCCCCTGGGGCCATCAGCCGTTTAACCGAAATGGGAAT
AGAACCCTTTCTTACTGCTTCATCTTTAGTATGTGTTTTAGCCCAGCGCTTGGCCCGGGTCCTTTGCCCCCATTGTAAGG
AAGCCATTCAGTTAACCAGAAGGGATTTGGCAAAGGTGCCGGACTTCCCCTTTGCAGAAGGAGAGGACGTGGTTACCCTA
TATAAGCCCAAAGGCTGTATGCGTTGCAGCAATACCGGCTTTCGAGGCAGGGTAGGAATCTACGAACTATTATTTGTTAC
AGAGAAAATTCAACGCCTGGCCCTGGAGAAGGCCTCGGCCAAAGAAATAACAAGTGCCGCCCTAGAAGAGGGCATGGTTG
TTCTCCGGCAGGATGGTTTGTTAAAGGTAAAACAAGGTATCACTTCGCTGGAAGAAGTATTGAGGGTGGTTGTTTAA

Protein sequence :
MKFTRGFLGTWLVNEGIISQKQLEDALEYQRQHPGKTGVLGKTLVQLGFCSEDDIARIIAKQAGVPFVSLENHTIDPAAI
TAVSVDVMKRYKALPLGFSEGKLMVAMQKPTDIVAIDNLRVLTGFDIKPVFSPDSELDVAIEKYSREAMEFNKVEEETPQ
IEEITANIDDDQKPAVQLANMILSQAVAAKASDVHIERYEQRMRVRFRIDGVLHDIMEPPVKMHASLVSRIKVMANMDIA
DRRIPQDGRISLKIEGRPIDIRVATLPTSYGERLTMRLLDNSARMITLEELGVAPKILERYREIVQLPYGFILVTGPTGS
GKSTTLYASLNAVDWVGKNVITIEDPVEYRMEGVNQIQINPQAGLTFASGLRSILRSDPDIIMVGEIRDQETAKIAIESA
MTGHMVFATLHTNDAPGAISRLTEMGIEPFLTASSLVCVLAQRLARVLCPHCKEAIQLTRRDLAKVPDFPFAEGEDVVTL
YKPKGCMRCSNTGFRGRVGIYELLFVTEKIQRLALEKASAKEITSAALEEGMVVLRQDGLLKVKQGITSLEEVLRVVV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
gspE YP_854406.1 type II secretion protein GspE Not tested PAI I APEC-O1 Protein 1e-94 48
gspE CAE85233.1 GspE, hypothetical type II secretion protein Not tested PAI V 536 Protein 8e-95 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dred_1034 YP_001112394.1 type II secretion system protein E VFG0182 Protein 1e-96 49
Dred_1034 YP_001112394.1 type II secretion system protein E VFG2048 Protein 2e-95 47
Dred_1034 YP_001112394.1 type II secretion system protein E VFG1876 Protein 1e-91 46
Dred_1034 YP_001112394.1 type II secretion system protein E VFG0112 Protein 5e-92 41
Dred_1034 YP_001112394.1 type II secretion system protein E VFG1880 Protein 3e-89 41