Gene Information

Name : Bcep1808_7043 (Bcep1808_7043)
Accession : YP_001109707.1
Strain :
Genome accession: NC_009227
Putative virulence/resistance : Unknown
Product : integrase catalytic subunit
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 10613 - 11449 bp
Length : 837 bp
Strand : -
Note : PFAM: Integrase, catalytic region; KEGG: bte:BTH_I1930 transposase

DNA sequence :
TTGAAAACGGTCTGCGAAGTTCTCGGCGTGGCGCGCTCCGGTGTGGCGGCGAAACGGACTCGCTCGTCCGATTGGCAAGA
CGGCCGCAGCACCAGACCGACTGACGACACGGAATTGGTCGAAGAAATCCAGGCCCACGTAGCGCACCTGCCGACTTACG
GCTATCGGCGCATCTGGGCGCTGCTGCGTCGCAGCCGCGAGATGGTCGGCGCGCCGTGCATCAACCACAAACGCGTCTAT
CGCGTGATGCGCGAGCATCAGTTGCTGCTGCGCCGTCCCGGCGTGCGTCGAGATAAGCATCGGCACGACGGCCGCGTGGC
CGTGGACCGGAGCAATACTCGCTGGTGCTCGGATGGCTTCGAGTTCCGGTGTGACGATGGCACGCCACTGCGCGTGACGT
TCGCGCTGGACTGCTGCGACCGGGAAGCGATTAGCTGGGCAGCGACGACCGGCGGGCATAGCGGTGACGTGGTCCGCGAC
GTGATGCTGGCCGCCGTCGAGCAGCGCTTCGGCACCACACAAACGGCACAGCCTATTGAATGGCTGACGGACAACGGCTC
GGCCTACATCGACCATCGCACGCGCCGCTTCGCACGAGAGTTGGGCCTGGAGCCGCTGACGACGCCCGTGCGCTCGCCGC
AAAGCAATGGCATGGCCGAATCGTTCGTGAAGACCATGAAGCACAATTACGTCGCCTATATGGACAAGCCCGACGCGCCA
ACGGCGCTCTCGCGTCTGGCTGCTGCGTTTGAGCATTACAACGAGCGTCACCCGCACAAAGCTCTGAAATATCGCTCGCC
TCGCGAGTTCAGGCGGACTGCGGCGTCATCAACCTAA

Protein sequence :
MKTVCEVLGVARSGVAAKRTRSSDWQDGRSTRPTDDTELVEEIQAHVAHLPTYGYRRIWALLRRSREMVGAPCINHKRVY
RVMREHQLLLRRPGVRRDKHRHDGRVAVDRSNTRWCSDGFEFRCDDGTPLRVTFALDCCDREAISWAATTGGHSGDVVRD
VMLAAVEQRFGTTQTAQPIEWLTDNGSAYIDHRTRRFARELGLEPLTTPVRSPQSNGMAESFVKTMKHNYVAYMDKPDAP
TALSRLAAAFEHYNERHPHKALKYRSPREFRRTAASST

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAC39284.1 hypothetical protein Not tested LPA Protein 3e-77 64
unnamed AAL67379.1 transposase-like protein Not tested PAI II CFT073 Protein 1e-74 64
tnpF AAD44739.1 TnpF Not tested SHI-2 Protein 3e-75 63
SF2985 NP_708759.1 insertion element IS2 transposase InsD Not tested SHI-1 Protein 5e-74 63
ECO111_3773 YP_003236109.1 putative IS2 transposase InsAB Not tested LEE Protein 2e-77 63
S3189 NP_838472.2 insertion element IS2 transposase InsD Not tested SHI-1 Protein 2e-77 61
S4050 NP_839218.2 insertion element IS2 transposase InsD Not tested SHI-2 Protein 4e-78 61
SF3708 NP_709447.1 IS2 transposase TnpB Not tested SHI-2 Protein 4e-78 61
SF3721 NP_709460.1 IS2 transposase TnpB Not tested SHI-2 Protein 4e-78 61
S4061 NP_839230.2 insertion element IS2 transposase InsD Not tested SHI-2 Protein 3e-78 61
insD YP_002414033.1 insertion element IS2 transposase InsD Not tested Not named Protein 2e-77 61
aec49 AAW51732.1 Aec49 Not tested AGI-3 Protein 1e-78 60
unnamed CAC39283.1 hypothetical protein Not tested LPA Protein 2e-75 57
insD YP_854263.1 IS2 transposase Not tested PAI I APEC-O1 Protein 7e-53 53
insD AAZ04432.1 IS2 transposase Not tested PAI I APEC-O1 Protein 6e-53 53

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Bcep1808_7043 YP_001109707.1 integrase catalytic subunit VFG0649 Protein 2e-74 63
Bcep1808_7043 YP_001109707.1 integrase catalytic subunit VFG0621 Protein 2e-78 61
Bcep1808_7043 YP_001109707.1 integrase catalytic subunit VFG0608 Protein 2e-78 61
Bcep1808_7043 YP_001109707.1 integrase catalytic subunit VFG1732 Protein 1e-77 61