Gene Information

Name : SACE_6029 (SACE_6029)
Accession : YP_001108128.1
Strain : Saccharopolyspora erythraea NRRL 2338
Genome accession: NC_009142
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 6766266 - 6767144 bp
Length : 879 bp
Strand : +
Note : -

DNA sequence : 
GTGAACGACGTGGTGCAGTGGATCGTCGAGCCCCTGCAGTTCGGGTTCATGCAACGGGCCCTGCTGATCAGCGTCGTCGC
CGGCCTGGTGTGCGCGGTGCTGTCGTGCTGGGTGACGCTCATCGGCTGGTCGCTGCTCGGCGACGCCGTCTCGCACGCCG
TGCTGCCAGGGGTCGTGCTTGCCTACGTGCTCTCGCTGCCGTTCTCCGCGGGCGCGTTCCTGTTCGGCACCCTGGCGGTG
GGCCTGATCGCCGCCGTGCGGTCCACGACCAAGCTCAAGGGCGACGCGGCGATCGGCGTGGTGTTCACCGGCCTGTTCGC
GCTCGGGCTGGTGCTGGTCTCGCGGATCCCGAGCCAGGTCGACCTCAACCACATCCTGTTCGGCAACGTCTTGGGCGTCT
CCGACAGCGACATCATCCAGGTGCTGGTCATCGCGGGCCTGGTGCTCACCGTCGCGCTGCTCAAGCGGCGCGACCTCACC
CTCTACGCCTTCGACCCCACCCACGCCCACGCCATCGGCCTCAACCCGCGGCGCATCGCCGCGCTGCTGCTGACGATGCT
CGCGCTGACGGTGGTCGTGGCGTTGCAGGCGGTCGGGGTCATCCTGGTGACCGCGATGCTCATCACGCCCGGGGCGACCG
CGTTCCTGCTGACCCGCCGGTTCTCCCGGATGCTCGCCGTGGCCGCCGCGCTGTCGGTGTTCAGCGGTGTGCTGGGCACC
TACCTCAGCTTCCACGTCGACACCTCGACCGGCGGGATGATCGTGCTCTGCCAGGCCTGCCTGTTCGGCGTGGTCTACCT
GGCCGCTCCCGGCCAGGGCCTCGTCGCCGAGGCGCTGCGCCGACGCCGTCGGCGCGCCGCGCGGGCCGCCGCGGTGTGA

Protein sequence : 
MNDVVQWIVEPLQFGFMQRALLISVVAGLVCAVLSCWVTLIGWSLLGDAVSHAVLPGVVLAYVLSLPFSAGAFLFGTLAV
GLIAAVRSTTKLKGDAAIGVVFTGLFALGLVLVSRIPSQVDLNHILFGNVLGVSDSDIIQVLVIAGLVLTVALLKRRDLT
LYAFDPTHAHAIGLNPRRIAALLLTMLALTVVVALQAVGVILVTAMLITPGATAFLLTRRFSRMLAVAAALSVFSGVLGT
YLSFHVDTSTGGMIVLCQACLFGVVYLAAPGQGLVAEALRRRRRRAARAAAV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 2e-43 49
sitD NP_461785.1 permease Virulence SPI-1 Protein 2e-43 49
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 4e-43 49
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 4e-43 49
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 4e-43 49
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 2e-44 46
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-44 46
sitC NP_461784.1 permease Virulence SPI-1 Protein 3e-44 46
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 2e-44 46
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 2e-44 46
EF0576 NP_814341.1 cation ABC transporter permease Not tested Not named Protein 1e-33 42
ef0094 AAM75297.1 EF0094 Not tested Not named Protein 7e-34 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SACE_6029 YP_001108128.1 ABC transporter BAC0442 Protein 2e-48 53
SACE_6029 YP_001108128.1 ABC transporter BAC0352 Protein 9e-44 49
SACE_6029 YP_001108128.1 ABC transporter BAC0351 Protein 1e-44 46
SACE_6029 YP_001108128.1 ABC transporter BAC0441 Protein 2e-40 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SACE_6029 YP_001108128.1 ABC transporter VFG0528 Protein 9e-44 49
SACE_6029 YP_001108128.1 ABC transporter VFG0527 Protein 1e-44 46