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Name : topB (SNSL254_pSN254_0063) Accession : YP_001101942.1 Strain : Genome accession: NC_009140 Putative virulence/resistance : Unknown Product : DNA topoisomerase III Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0550 EC number : 5.99.1.2 Position : 43217 - 45409 bp Length : 2193 bp Strand : - Note : identified by match to protein family HMM PF01131; match to protein family HMM PF01396; match to protein family HMM PF01751; match to protein family HMM TIGR01056 DNA sequence : ATGGACCTTTATATCTGCGAGAAGCCTTCTCAGGCAAAAGATTTGGCTGGCGTAATGAAGGCCTCCCAACGAGGTGATGG ATTTCTCCATGATGGAGGAAACCGCGTTATTACGTGGGCGTTCGGCCACCTGCTGGAATTGTATATGCCAGACGATTATG ACGAACGCTACAAGTCATGGTCACTGGAGACCCTCCCTATTGCACCAGAGTCATGGCGGTACAACGTTCGCAAGAGTGCG TTCAAACAGTACAAAATTGTTGAGGGACTGGTCAAAAAGGCGAGCACCATCTACATCTCAACGGACTACGACCGAGAAGG TGAGGCTATCGCCCGTTCGCTTCTGGATCGATTCCGCTACTCTGGCCCTATTCGCCGAGTTTGTTTGACGGCTCTCGATG AGTCAAGCATCAAGAAAGCGCTGAACAACGTAAAGGATGGCAAGGATACGGTCTCACTCTACTACGCCGCATTGGCACGG CAACGCGCTGACTGGTTGGTAGGCATGAACGTGAGCCGCCTCTACACAGTGCTGGCCCGAGATGTCGGCTTCAACCACAC TCTTCACGTTGGCAGGGTTATCACCCCAACCGTCGCTCTTGTTTGTCAACGGGACCGAGAGATCGCCGGTTTCACCCCCT CACCATACTGGACTCTGGGTGTGAACGTGTCCGTACAGAATGGACAGTTTGCCGCCCAATGGATACCACCAGAAGAGTGC AGTGACGAGCAAGGCCGGTGCGTCAATAAGGCCTATGCCGAGCAGGTAGCCTCCCAGGTCAATGGTGCCAATGCTGTTAT CAGCAAAGCAGAAACCAAACCAGGTAAAGAGTCAGCCCCCCTCCCCTTCGATCTAACGTCGCTGCAACAATACGCGAGCA AACGATGGGGATACACAGCTCAGCAGGTACTGGATGCAGCTCAAGCTCTGTACGAGACGCACAAAGCGACCACCTACCCT CGTACTGACAGTCGTTATCTACCCGAGAGCCAAAAGGAAGACATTCCGGACATTCTCCAGGCGCTCATTTTGTCCGATCA GAACGTCTCTGGGCTGGTGGCTGGCGCAGATCCTCATCGCAAGGCCAGGGTATTCAATGACGCCAAAGTGACCGCGCACC ACGCGATCATTCCAACACCGGCCAGAACAGACATCAGTGCCATGTCTGAGATCGAGTTCAATCTTTACGACGCCATCCGT CGTTTCTACATCGCGCAGTTCTACAGCGAGTTCGAGTTCACCAAAACCTCCATCGAGGTGCAGTGTGGGCGTCACCTCTT TGCGTCCGCTGGTAAGACACCTACCAAACAAGGCTGGAAGGTTTTGTTTGCTTCTGATAGTGAAAGCAGTCCCAAGGACG AGGGGGAAGACACCGACGCGCCGGTTGAACAAGAGAAGCTCCCCAGGGTTAGCCAGGGCGAACCTGCCTTGCTGAATGGG GCCGAGCTGGCAAACAAAATGACGCGGCCAGCACCGCACTTCACCGAAGCCACATTGCTTGCCGCGATGGAGAACATTGC CCGGTTCGTGACTGAGGAGAAGTTCAAACAAATCCTCAAAGACACAGCCGGTTTAGGCACTCCAGCAACACGCGCAAGCA TCATCCAGGGCGCTGTTGATAAAGGCTACTTCAAGCGTCAGAAAAAGGTACTGCTTGCAACTGATAAGGCTCATGCGCTT ATAGCAGTGCTTCCACCAGCCATCAAATCACCCGGCATGACTGCGGCTTGGGAGCAGGAGCTTGAGAAAGTTGCCTCCGG CTCCGGGAACATGTCTGTCTTCATGAAGCAGATTTCCACCTGGATCTGCCAAATGGTTGAGCAGCTCAAAGTGGCCGCAC CGGTTCTGACCAAAGAAGGTGGCGCGATGGCTAAAGCCTTCGAGGGCGCGAAGCCTCCTTCACACGAATGCTTCAACTGC GGTGGAGAGATGCACCGGATCAAAGGGAAGAACGGTTTTTTCTGGGGCTGCCAGAACGAGGCTTGCAAGAAGACGTTCCC AGACAACCGAGGGAAACCCGAGAAACGTATCGCGGCGGAGGATTGTCCAGACTGCCCAGATTGCGGTAGCCCGATGCGTC TCAGGAAAGGAAAAGCCCCTGGCAAGAAACGAGCCTCTAAGTTCTGGGGCTGCACAGCGTATCCCGATTGCAAAGGCACT ATGCCCTTCAAAAAGTCGGACTTTATGGATTGA Protein sequence : MDLYICEKPSQAKDLAGVMKASQRGDGFLHDGGNRVITWAFGHLLELYMPDDYDERYKSWSLETLPIAPESWRYNVRKSA FKQYKIVEGLVKKASTIYISTDYDREGEAIARSLLDRFRYSGPIRRVCLTALDESSIKKALNNVKDGKDTVSLYYAALAR QRADWLVGMNVSRLYTVLARDVGFNHTLHVGRVITPTVALVCQRDREIAGFTPSPYWTLGVNVSVQNGQFAAQWIPPEEC SDEQGRCVNKAYAEQVASQVNGANAVISKAETKPGKESAPLPFDLTSLQQYASKRWGYTAQQVLDAAQALYETHKATTYP RTDSRYLPESQKEDIPDILQALILSDQNVSGLVAGADPHRKARVFNDAKVTAHHAIIPTPARTDISAMSEIEFNLYDAIR RFYIAQFYSEFEFTKTSIEVQCGRHLFASAGKTPTKQGWKVLFASDSESSPKDEGEDTDAPVEQEKLPRVSQGEPALLNG AELANKMTRPAPHFTEATLLAAMENIARFVTEEKFKQILKDTAGLGTPATRASIIQGAVDKGYFKRQKKVLLATDKAHAL IAVLPPAIKSPGMTAAWEQELEKVASGSGNMSVFMKQISTWICQMVEQLKVAAPVLTKEGGAMAKAFEGAKPPSHECFNC GGEMHRIKGKNGFFWGCQNEACKKTFPDNRGKPEKRIAAEDCPDCPDCGSPMRLRKGKAPGKKRASKFWGCTAYPDCKGT MPFKKSDFMD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| PMI2630 | YP_002152332.1 | DNA topoisomerase III | Not tested | Not named | Protein | 5e-136 | 44 |
| topB1 | YP_005176228.1 | DNA topoisomerase III | Not tested | ICEPmu1 | Protein | 1e-140 | 43 |
| topB | AAN62317.1 | putative DNA topoisomerase III | Not tested | PAGI-3(SG) | Protein | 4e-132 | 43 |
| pph56 | CAI36097.1 | Topoisomerase IA | Not tested | PPHGI-1 | Protein | 3e-130 | 43 |
| topB | AAN62194.1 | putative DNA topoisomerase III | Not tested | PAGI-2(C) | Protein | 3e-140 | 42 |
| topB | AAF14809.1 | topoisomerase B | Not tested | SPI-7 | Protein | 4e-131 | 41 |
| topB | NP_458624.1 | topoisomerase B | Not tested | SPI-7 | Protein | 6e-131 | 41 |
| topB | NP_807836.1 | DNA topoisomerase III | Not tested | SPI-7 | Protein | 6e-131 | 41 |
