Gene Information

Name : HEAR0689 (HEAR0689)
Accession : YP_001099010.1
Strain : Herminiimonas arsenicoxydans
Genome accession: NC_009138
Putative virulence/resistance : Virulence
Product : DNA repair protein; CP4-6 prophage
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2003
EC number : -
Position : 686433 - 686960 bp
Length : 528 bp
Strand : -
Note : Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type h : extrachromosomal origin

DNA sequence : 
ATGACAACTGATATCAACGCATGTGCAGAGAAACAGGGCACGGACACCCTCCGGCCTTGGAGCGAGTTAATGCGTGATCT
TACGGCGGTAGACACCTGGATCGTGCACAGGGCAATTGAAATCTTGAATGACCAGGTAATCAAACACGGTCCGAAATTAG
CCAGCCCTCAGGACGTGAAAGACTATTTACGTCTGCAACTGATCAATGAGCAACGAGAGGTGTTCGCGGTGGTGTTTATG
GACACTCAAAATCGTGTGATTGCCTATGAGCCACTGTTTTTTGGCACGATCCATCAAACATCCGTGTATCCGCGAGTAAT
CGTTCAACGCGCGATGTCACTGAATGCTGCATCAATGATCCTGGCGCATAACCATCCGTCAGGTAGTACGCAACCTAGTG
ATGCAGACAAGCAGTTGACCAATCGTCTTAAGTCTCTTCTTGAATCCATCGACGTACGCGTACTAGATCACTTCATTATT
GGAGAGGAAGGGACATTCTCCTTTGCAGAACATGGATTGCTCTTCTAA

Protein sequence : 
MTTDINACAEKQGTDTLRPWSELMRDLTAVDTWIVHRAIEILNDQVIKHGPKLASPQDVKDYLRLQLINEQREVFAVVFM
DTQNRVIAYEPLFFGTIHQTSVYPRVIVQRAMSLNAASMILAHNHPSGSTQPSDADKQLTNRLKSLLESIDVRVLDHFII
GEEGTFSFAEHGLLF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
radC AAN62140.1 putative DNA repair protein RadC Not tested PAGI-2(C) Protein 1e-40 56
radC AAN62275.1 putative DNA repair protein RadC Not tested PAGI-3(SG) Protein 2e-34 51
VC0510 NP_230161.1 DNA repair protein RadC-like protein Not tested VSP-2 Protein 5e-27 48
unnamed AAK00479.1 unknown Not tested SHI-1 Protein 6e-25 43
unnamed CAD42098.1 hypothetical protein Not tested PAI II 536 Protein 1e-24 43
Z1217 NP_286752.1 RadC family DNA repair protein Not tested TAI Protein 2e-25 43
unnamed CAD66203.1 hypothetical protein Not tested PAI III 536 Protein 1e-25 43
ECO103_3589 YP_003223446.1 radC-like protein YeeS Not tested LEE Protein 2e-25 43
yeeS AAZ04458.1 putative RadC-like protein Not tested PAI I APEC-O1 Protein 4e-26 43
yeeS YP_854323.1 radC-like protein YeeS Not tested PAI I APEC-O1 Protein 6e-26 43
z1217 CAD33787.1 Z1217 protein Not tested PAI I 536 Protein 3e-25 43
c5152 NP_757000.1 radC-like protein yeeS Not tested PAI II CFT073 Protein 6e-26 43
yeeS CAI43846.1 YeeS protein Not tested LEE Protein 2e-25 43
yeeS ADD91702.1 YeeS Not tested PAI-I AL862 Protein 2e-25 43
yeeS NP_838484.1 RADC family DNA repair protein Not tested SHI-1 Protein 4e-25 43
unnamed AAL08475.1 unknown Not tested SRL Protein 2e-25 43
yeeS NP_708770.1 RADC family DNA repair protein Not tested SHI-1 Protein 4e-25 43
yeeS CAI43901.1 YeeS protein Not tested LEE Protein 1e-25 43
unnamed AAL67345.1 intergenic-region protein Not tested PAI II CFT073 Protein 5e-25 43
yeeS CAE85201.1 YeeS protein Not tested PAI V 536 Protein 3e-25 43
aec73 AAW51756.1 Aec73 Not tested AGI-3 Protein 3e-25 43
VC0395_A1383 YP_001217326.1 DNA repair protein RadC Not tested VPI-2 Protein 2e-26 43
VC1786 NP_231421.1 DNA repair protein RadC Not tested VPI-2 Protein 2e-26 43
VPI2_0034 ACA01849.1 DNA repair protein RadC Not tested VPI-2 Protein 1e-26 43
Z1657 NP_287160.1 RadC family DNA repair protein Not tested TAI Protein 2e-24 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HEAR0689 YP_001099010.1 DNA repair protein; CP4-6 prophage VFG1678 Protein 5e-26 43
HEAR0689 YP_001099010.1 DNA repair protein; CP4-6 prophage VFG1528 Protein 1e-25 43
HEAR0689 YP_001099010.1 DNA repair protein; CP4-6 prophage VFG1617 Protein 5e-25 43
HEAR0689 YP_001099010.1 DNA repair protein; CP4-6 prophage VFG1066 Protein 7e-26 43
HEAR0689 YP_001099010.1 DNA repair protein; CP4-6 prophage VFG0660 Protein 1e-25 43
HEAR0689 YP_001099010.1 DNA repair protein; CP4-6 prophage VFG1119 Protein 6e-27 43